PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G074700.1.p
Common NameSb04g006180, SORBIDRAFT_04g006180
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 178aa    MW: 19225.5 Da    PI: 6.516
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G074700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.82.4e-1380126551
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                           ++ rr+++NRe+ArrsR RK+ +++eL   v+eL + N++L  el++
  Sobic.004G074700.1.p  80 RKKRRLASNRESARRSRVRKQRRLDELSLQVAELLGTNHRLLVELNH 126
                           7899**************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.9E-1176140IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-977126No hitNo description
PROSITE profilePS5021710.378127IPR004827Basic-leucine zipper domain
PfamPF001709.5E-1080126IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.98E-1080129No hitNo description
PROSITE patternPS0003608398IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MQQNCAANLA CLPGFDLASL FLPQIQNDPI YDFSSFDMVD LDPYPYTYSC NGSVATTVSS  60
VSAAAAAADD HQERRGNDER KKRRLASNRE SARRSRVRKQ RRLDELSLQV AELLGTNHRL  120
LVELNHVIAK HAAVVRENAK LRDEAAGLQR KLSEMEVGGV GEAEAGAGAG AGTPEMA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19298RRSRVRK
29299RRSRVRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G074700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453452.11e-128basic leucine zipper 8
TrEMBLC5XX341e-126C5XX34_SORBI; Uncharacterized protein
STRINGSb04g006180.11e-127(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127422735
Representative plantOGRP1690533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13600.18e-09basic leucine-zipper 58