PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G067100.2.p
Common NameSb04g005620, SORBIDRAFT_04g005620
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 307aa    MW: 33122.2 Da    PI: 6.2462
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G067100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-072562892154
                           HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           k +yp+++++++L +++gL+ +q+ +WF N+R +
  Sobic.004G067100.2.p 256 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 289
                           569*****************************87 PP
2ELK28.14.5e-10210231122
                   ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                           ELK++L+++Y+++L+++++E++
  Sobic.004G067100.2.p 210 ELKNELKQGYKEKLVDIREEIM 231
                           9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-194589IPR005540KNOX1
PfamPF037901.5E-164885IPR005540KNOX1
SMARTSM012566.2E-2699154IPR005541KNOX2
PfamPF037914.5E-16107153IPR005541KNOX2
PfamPF037896.8E-7210231IPR005539ELK domain
SMARTSM011886.3E-4210231IPR005539ELK domain
PROSITE profilePS5121310.057210230IPR005539ELK domain
PROSITE profilePS5007111.548230293IPR001356Homeobox domain
SuperFamilySSF466899.84E-16232295IPR009057Homeodomain-like
SMARTSM003892.8E-10232297IPR001356Homeobox domain
CDDcd000861.85E-11233294No hitNo description
Gene3DG3DSA:1.10.10.601.4E-24237294IPR009057Homeodomain-like
PfamPF059208.4E-18250289IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSFHYPDHGL SMDAAAAAAA AAAAAAAASS PNPSGFSSPG VVGGEREKAA IAAHPLYERL  60
LEAHVACLRV ATPVDQLPRI DAQIAARPPP LAAAAGAAAA GGPSGGEELD LFMTHYVLLL  120
CSFKEQLQQH VRVHAMEAVM GCWELEQSLQ SLTGASPGEG TGATMSDDED NQVDSEANMF  180
DGNDGSDGMG FGPLILTEGE RSLVERVRQE LKNELKQGYK EKLVDIREEI MRKRRAGKLP  240
GDTASVLKAW WQAHSKWPYP TEDDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPTSSGE  300
KTKKKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286305RKRNWHSNPTSSGEKTKKKR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots, leaf blades, leaf sheaths and flowers. Isoform 2 is expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:12034492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G067100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685100.0BT068510.1 Zea mays full-length cDNA clone ZM_BFb0231A20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315703.10.0homeobox protein knotted-1-like 2
SwissprotQ0E3C30.0KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A1Z5RLP90.0A0A1Z5RLP9_SORBI; Uncharacterized protein
STRINGSb04g005620.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-145KNOTTED1-like homeobox gene 3