PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G059900.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 314aa    MW: 33182.8 Da    PI: 5.186
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G059900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1537.2e-17137189358
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                           ++kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l    +  ++
  Sobic.004G059900.3.p 137 DVKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLT---DANQQ 189
                           68***************************************9995554...44443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.8E-18135199IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.185137189IPR004827Basic-leucine zipper domain
PfamPF001703.1E-14138187IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-13138190No hitNo description
Gene3DG3DSA:1.20.5.1705.4E-13139190No hitNo description
CDDcd147023.74E-23140190No hitNo description
PROSITE patternPS000360142157IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MKKCPSELEL EDATAAAAAA VAEQKPVHDV AALAPFGAGG VFPPSDLSAF SFADSNTLNG  60
SIHNHLWSHN HNVRHPAVST TIESQSSICA AASPTSATNL YLKESQTLGG TSGSDSDSES  120
LLDIEGGPCE QSTNPQDVKR MRRMVSNRES ARRSRKRKQA HLADLETQVD QLRGENASLF  180
KQLTDANQQF TTAVTDNRIL KSDVEALRVK VKLAEDMVAR GALSCGLGSL GLSPVLNPRQ  240
ACRGPDVLSG LDFPGDDACF TGLSATEQLQ NSPLQSIASL ESLENRMASE VTSCGGPGVD  300
VWPWDHSNGG LSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157RRSRKRK
2151158RRSRKRKQ
3153158SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.69130.0leaf| ovary
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G059900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0346890.0BT034689.1 Zea mays full-length cDNA clone ZM_BFb0011L11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315644.10.0basic leucine zipper 9-like isoform X1
SwissprotQ6H5001e-140RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A1Z5RLL90.0A0A1Z5RLL9_SORBI; Uncharacterized protein
STRINGSb04g005020.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.12e-40basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]