PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G059900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 320aa MW: 33941.7 Da PI: 5.3873 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 53 | 7.4e-17 | 143 | 195 | 3 | 58 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 ++kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l + ++ Sobic.004G059900.2.p 143 DVKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLT---DANQQ 195 68***************************************9995554...44443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.8E-18 | 141 | 205 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.185 | 143 | 195 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.74E-13 | 144 | 196 | No hit | No description |
Pfam | PF00170 | 3.1E-14 | 144 | 193 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.3E-13 | 145 | 196 | No hit | No description |
CDD | cd14702 | 8.28E-23 | 146 | 196 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 148 | 163 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MKKCPSELEL EAFLRGREDA TAAAAAAVAE QKPVHDVAAL APFGAGGVFP PSDLSAFSFA 60 DSNTLNGSIH NHLWSHNHNV RHPAVSTTIE SQSSICAASP TSATNLYLKE SQTLGGTSGS 120 DSDSESLLDI EGGPCEQSTN PQDVKRMRRM VSNRESARRS RKRKQAHLAD LETQVDQLRG 180 ENASLFKQLT DANQQFTTAV TDNRILKSDV EALRVKVKLA EDMVARGALS CGLGSLGLSP 240 VLNPRQACRG PDVLSGLDFP GDDACFTGLS ATEQLQNSPL QSIASLESLE NRMASEVTSC 300 GGPGVDVWPW DHSNGGLSK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 157 | 163 | RRSRKRK |
2 | 157 | 164 | RRSRKRKQ |
3 | 159 | 164 | SRKRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.6913 | 0.0 | leaf| ovary |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G059900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034689 | 0.0 | BT034689.1 Zea mays full-length cDNA clone ZM_BFb0011L11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021315645.1 | 0.0 | basic leucine zipper 9-like isoform X2 | ||||
Swissprot | Q6H500 | 1e-137 | RSBZ4_ORYSJ; bZIP transcription factor RISBZ4 | ||||
TrEMBL | A0A1Z5RL49 | 0.0 | A0A1Z5RL49_SORBI; Uncharacterized protein | ||||
STRING | Sb04g005020.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 4e-40 | basic leucine zipper 9 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G059900.2.p |
Publications ? help Back to Top | |||
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