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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.004G059900.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 321aa MW: 34012.8 Da PI: 5.3873 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.004G059900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 53 | 7.5e-17 | 144 | 196 | 3 | 58 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58
++kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l + ++
Sobic.004G059900.1.p 144 DVKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLT---DANQQ 196
68***************************************9995554...44443 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0071333 | Biological Process | cellular response to glucose stimulus |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 321 aa
Download sequence Send
to blast |
MKKCPSELEL EAFLRGREDA TAAAAAAVAE QKPVHDVAAL APFGAGGVFP PSDLSAFSFA 60 DSNTLNGSIH NHLWSHNHNV RHPAVSTTIE SQSSICAAAS PTSATNLYLK ESQTLGGTSG 120 SDSDSESLLD IEGGPCEQST NPQDVKRMRR MVSNRESARR SRKRKQAHLA DLETQVDQLR 180 GENASLFKQL TDANQQFTTA VTDNRILKSD VEALRVKVKL AEDMVARGAL SCGLGSLGLS 240 PVLNPRQACR GPDVLSGLDF PGDDACFTGL SATEQLQNSP LQSIASLESL ENRMASEVTS 300 CGGPGVDVWP WDHSNGGLSK *
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 158 | 164 | RRSRKRK |
2 | 158 | 165 | RRSRKRKQ |
3 | 160 | 165 | SRKRKQ |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT034689 | 0.0 | BT034689.1 Zea mays full-length cDNA clone ZM_BFb0011L11 mRNA, complete cds. |
Publications
? help Back to Top |
- Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]
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