|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sobic.004G059100.1.p |
Common Name | Sb04g004960, SORBIDRAFT_04g004960 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
Family |
Trihelix |
Protein Properties |
Length: 387aa MW: 40862.6 Da PI: 4.1157 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.004G059100.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 33.4 | 1.1e-10 | 68 | 152 | 1 | 70 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...............rergferspkqCkekwenlnkrykkikegekk 70
+Wt e+laL++ + +++ +r+ ++ ++W+ v++++ r g +r++ +C+ +we l+ +y +++++e +
Sobic.004G059100.1.p 68 EWTAAETLALVAEVAAVDDGWSRSVSAFQKWAMVAENLaaseafasgprtrrgRGSGSKRTAGECRRRWEALAAEYGAVRRWEVR 152
5**************************************************99999**************************976 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 387 aa
Download sequence Send
to blast |
MDPTAADQPC VIQALPANCN TLPPPPPLVQ ALAAQHSPAK TNPPSSPAAK RRPAPPSPRR 60 TRSGGAPEWT AAETLALVAE VAAVDDGWSR SVSAFQKWAM VAENLAASEA FASGPRTRRG 120 RGSGSKRTAG ECRRRWEALA AEYGAVRRWE VRTGGTYWEM GAAARRKAGL PAEFDAEVYG 180 AMDALIRVEE ALLADAAGAG AGGEEMEGLV GGGAAVEVGE QDGGDSGEAE VGKEQVQVQE 240 DASAGEEEEE PQEEKEEEEE EEEEEDVDED GEEMQEDGGN AGASNDLEGH ETGASIEPEK 300 SQNIAWELAN KLHENAQHIH TILNEEAAQD GGQNHALGGL MLPDAMEATR KKADELIKSL 360 GGLVSYLNQF TELVKETGFE NIAGMT*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT034113 | 0.0 | BT034113.1 Zea mays full-length cDNA clone ZM_BFc0028J08 mRNA, complete cds. |
GenBank | BT085710 | 0.0 | BT085710.1 Zea mays full-length cDNA clone ZM_BFc0050E20 mRNA, complete cds. |
GenBank | EU969957 | 0.0 | EU969957.1 Zea mays clone 337834 hypothetical protein mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT4G31270.1 | 4e-14 | sequence-specific DNA binding transcription factors |