PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G041600.1.p | ||||||||
Common Name | Sb04g003610, SORBIDRAFT_04g003610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 260aa MW: 27265.3 Da PI: 9.6676 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57 | 3.2e-18 | 132 | 186 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+ q + Le+ F+ ++ +s+ e++eL++++gL+ rqV vWFqNrRa+ k Sobic.004G041600.1.p 132 RKKLRLTAAQATMLEDSFRAHNILSHGEKQELSRRVGLSARQVEVWFQNRRARTK 186 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 110.7 | 9.7e-36 | 132 | 221 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl++ q+++LE+sF++++ L++ +K+el+r++gl++rqv+vWFqnrRARtk+kq+E+d++ L+r++d+l+++n+rL+++ ++Lr+ Sobic.004G041600.1.p 132 RKKLRLTAAQATMLEDSFRAHNILSHGEKQELSRRVGLSARQVEVWFQNRRARTKLKQTEVDCDLLRRWCDRLTDDNARLRRDLADLRR 220 69************************************************************************************996 PP HD-ZIP_I/II 90 e 90 + Sobic.004G041600.1.p 221 A 221 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.601 | 128 | 188 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-18 | 130 | 197 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.5E-14 | 130 | 192 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-17 | 132 | 186 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.26E-11 | 132 | 189 | No hit | No description |
Pfam | PF00046 | 1.2E-15 | 132 | 186 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.3E-5 | 159 | 168 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 163 | 186 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 168 | 184 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 3.7E-12 | 188 | 231 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.9E-7 | 188 | 219 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSSLTTAGSS MEEQYYSVSV SVSMSPEEVG THLSLGIGSG GGGGEARSLR LAPPPPTRTV 60 QLFGEVLSVQ DDDRDGDEAQ ALHHHQRGRP TAASRKKKRD AAAAGGGTAA AADSHQSKKA 120 KSTCGDDGGG GRKKLRLTAA QATMLEDSFR AHNILSHGEK QELSRRVGLS ARQVEVWFQN 180 RRARTKLKQT EVDCDLLRRW CDRLTDDNAR LRRDLADLRR AAASTSLGAG AAVCASCGGG 240 TDDKRQPAGA AAAGGNMLA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 180 | 188 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G041600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005412 | 4e-51 | AP005412.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13. | |||
GenBank | AP014958 | 4e-51 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 4e-51 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002451550.1 | 0.0 | putative homeobox-leucine zipper protein HOX26 | ||||
Swissprot | Q67UX6 | 5e-50 | HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26 | ||||
TrEMBL | C5XUP4 | 0.0 | C5XUP4_SORBI; Uncharacterized protein | ||||
STRING | Sb04g003610.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8315 | 32 | 49 | Representative plant | OGRP19700 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 7e-22 | homeobox protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G041600.1.p |
Entrez Gene | 8074637 |