 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sobic.004G040700.1.p |
| Common Name | Sb04g003530, SORBIDRAFT_04g003530 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
| Family |
C2H2 |
| Protein Properties |
Length: 251aa MW: 29261 Da PI: 7.4359 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.004G040700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 11.3 | 0.0011 | 37 | 52 | 5 | 20 |
TTTEEESSHHHHHHHH CS
zf-C2H2 5 dCgksFsrksnLkrHi 20
+C++ F+r++ L++Hi
Sobic.004G040700.1.p 37 NCNTEFKRREALESHI 52
6**************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 251 aa
Download sequence Send
to blast |
MELASGDDEL KSLLQNFHRV SQGYKDALME VQALRVNCNT EFKRREALES HITDLKKDNE 60
RLRRLYTETL FKFTNQVKFH AEAQSLKEEL EKANSRLISM EEEHKREAEQ LKHSSEMNSN 120
DLENKLSHAL VQQARDEAAM KQLKSELSAH KAHIDMLGSR LEQVTADVHS QYKNEIQDLR 180
DVISVEQEEK KDMHRKLQNA ENELRITRMK QAEQQRDSVS VQHVETLKQK VMKLRKENES 240
LKRRLASSVA *
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU962609 | 0.0 | EU962609.1 Zea mays clone 244191 4/1 protein mRNA, complete cds. |
