PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G036900.8.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | SBP | ||||||||
Protein Properties | Length: 325aa MW: 35331.1 Da PI: 10.1252 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.2 | 1.8e-41 | 180 | 256 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC++dls+akeyhr+hkvCe hska++v+v+gle+rfCqqCsrfh lsefD++k+sCrrrL++hn+rrrk+q+ Sobic.004G036900.8.p 180 CQVEGCKVDLSSAKEYHRKHKVCEPHSKASKVVVAGLERRFCQQCSRFHGLSEFDQKKKSCRRRLNDHNARRRKPQP 256 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.5E-33 | 173 | 241 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.009 | 177 | 254 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.71E-39 | 179 | 259 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.3E-31 | 180 | 253 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MGSFGMDWNQ KASVLWDWEN LPPIGANMSD NPRMTAAPQG EAKFAGLEAT RHESVHSSCG 60 TFSSSSEMGY GSSKSSVSAS TDSSPKAKGN SMELNFAPAK APDKNTDSGK VDDARTSPSS 120 VIAISSGEPV LSLKLGKRTY FEDVCGGQSV KSLPSDTSAV TPLASAKKAK SAPNTQKSYC 180 QVEGCKVDLS SAKEYHRKHK VCEPHSKASK VVVAGLERRF CQQCSRFHGL SEFDQKKKSC 240 RRRLNDHNAR RRKPQPEAFS FGSSRLSTMF YGSSKPLVAL SFSEANTLFI FLLLATIMFK 300 NLRNAKLHIL SVKLIFLFIY NSVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-29 | 180 | 253 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 252 | KKKSCRRRLNDHNARRRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G036900.8.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039521 | 0.0 | BT039521.1 Zea mays full-length cDNA clone ZM_BFc0017D10 mRNA, complete cds. | |||
GenBank | BT039945 | 0.0 | BT039945.1 Zea mays full-length cDNA clone ZM_BFc0054D09 mRNA, complete cds. | |||
GenBank | BT053864 | 0.0 | BT053864.1 Zea mays full-length cDNA clone ZM_BFb0339F10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021315534.1 | 0.0 | squamosa promoter-binding-like protein 3 isoform X1 | ||||
Refseq | XP_021315535.1 | 0.0 | squamosa promoter-binding-like protein 3 isoform X1 | ||||
Refseq | XP_021315536.1 | 0.0 | squamosa promoter-binding-like protein 3 isoform X1 | ||||
Swissprot | A2X0Q6 | 1e-107 | SPL3_ORYSI; Squamosa promoter-binding-like protein 3 | ||||
Swissprot | A3A2Z8 | 1e-107 | SPL3_ORYSJ; Squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A1Z5RKS6 | 0.0 | A0A1Z5RKS6_SORBI; Uncharacterized protein | ||||
STRING | Sb04g003175.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 2e-42 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G036900.8.p |