PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G036500.1.p
Common NameSb04g003140, SORBIDRAFT_04g003140
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 431aa    MW: 47100.9 Da    PI: 8.0884
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G036500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.31.1e-30258312155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           kprlrWt eLHe Fv+ v++LGG+ekAtPk +l+l+kv+gLt++hvkSHLQkYR 
  Sobic.004G036500.1.p 258 KPRLRWTLELHELFVKSVNKLGGPEKATPKGVLKLVKVEGLTIYHVKSHLQKYRF 312
                           79****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.233255315IPR017930Myb domain
SuperFamilySSF466892.51E-15256312IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-27257313IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-22258312IPR006447Myb domain, plants
PfamPF002491.2E-7260311IPR001005SANT/Myb domain
PfamPF143791.0E-21348392IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MTKETNSLNL KAVKQFTSPG RMAHTRTAPQ PSAHQLLSAP HDLLPSSSCA ASQSSKILPF  60
DLQKCSPDST NGTPVSRVSQ AGLLSKDLVS PSSSSTFCTS MYSSSSTNSK SCRQADALPF  120
LPHPPKSEHQ QTSGGQSSSS SSLLFGTDLN NGGQSEAEPA ADLKDFLNLS GDASGGSFHG  180
ESNGMAFREQ MEFQFLSEQL GIAITDNEES PRLDDIYDRP PQTSSCPVLS CSDQDDLQRT  240
GSPVKVQLSS SRAASCNKPR LRWTLELHEL FVKSVNKLGG PEKATPKGVL KLVKVEGLTI  300
YHVKSHLQKY RFAKHLPETK EDMKFSSEDK ISKSEIPGNN AGRKKSLQLA EALRMQMEVQ  360
KQLHEQLEVQ RQLQVRIEEH AKYLQKILEQ QKASNSLPAM TSSIERELSE SKEEKKPKTQ  420
ADTFSAPLPN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-24258315259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-24258315259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-24258315259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-24258315259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-24258315259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-24258315259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-24258315259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-24258315259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout all stages of plant growth. Increased expression in leaves before the booting stage. {ECO:0000269|PubMed:26082401}.
UniprotTISSUE SPECIFICITY: Expressed in the root cap and in the exodermis of the root, in the root tip of lateral roots, in the mesophyll cells of the leaf, in pollen, vascular cylinder of the anther and the veins of the lemma, palea and pistils, and in the xylem and phloem regions of large vascular bundles, small vascular bundles and diffuse vascular bundles in node I (PubMed:26082401). {ECO:0000269|PubMed:26082401}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G036500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0383170.0BT038317.1 Zea mays full-length cDNA clone ZM_BFb0227D23 mRNA, complete cds.
GenBankEU9545900.0EU954590.1 Zea mays clone 1472551 hypothetical protein mRNA, complete cds.
GenBankJX4699780.0JX469978.1 Zea mays subsp. mays clone UT3338 G2-like transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453279.20.0protein PHOSPHATE STARVATION RESPONSE 3
SwissprotQ6YXZ41e-158PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBLA0A194YMM80.0A0A194YMM8_SORBI; Uncharacterized protein
STRINGSb04g003140.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45263769
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.29e-80G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]