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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.004G026700.1.p |
Common Name | Sb04g002360, SORBIDRAFT_04g002360 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 351aa MW: 37338.6 Da PI: 5.8014 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.004G026700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 68.5 | 1.1e-21 | 251 | 313 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
e+elk+++rkq+NRe+ArrsR+RK+ae+eeL +++++L +eN++L+ ele+++ke+++l s++
Sobic.004G026700.1.p 251 ERELKKQKRKQSNRESARRSRLRKQAECEELGQRAEALRSENSSLRAELERIRKEYEQLLSQN 313
89**********************************************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 351 aa
Download sequence Send
to blast |
MGSNDPSTPS KASKASEQDQ PPATTSSGTP SVYPEWPSFQ AYSAIPPHGF FPPTVAANPQ 60 AHPYMWGAQP MVPPYGTPPP PYVMYPPGTV YAHPSTPPTM HPFSHYPMPT NGHAETPGAA 120 PSAPEMNGKS EPGRTSAPSA NGITSHSESG SESESEGSDA NSQNDSHSKD NDGKEDGNSQ 180 NGISYSASQG MLNQTMAMLP VQPGAMVGGV PSSTANLNIG MDYWAASGSA AVPGTHGKAP 240 VGSARGDQWD ERELKKQKRK QSNRESARRS RLRKQAECEE LGQRAEALRS ENSSLRAELE 300 RIRKEYEQLL SQNASLKEKL GATSDSIPDM NEKNDGDGSY KRQHDSDAQS *
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 267 | 273 | RRSRLRK |
2 | 267 | 274 | RRSRLRKQ |
Functional Description ? help
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Source |
Description |
UniProt | Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ728260 | 0.0 | KJ728260.1 Zea mays clone pUT6537 bZIP transcription factor (bZIP14) mRNA, partial cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G32150.1 | 2e-67 | basic region/leucine zipper transcription factor 68 |
Publications
? help Back to Top |
- Tabata T,Nakayama T,Mikami K,Iwabuchi M
HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143] - Tabata T, et al.
A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif. Science, 1989. 245(4921): p. 965-7 [PMID:2772648] - Mikami K, et al.
Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants. Mol. Gen. Genet., 1995. 248(5): p. 573-82 [PMID:7476857] - Nakayama T,Okanami M,Meshi T,Iwabuchi M
Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain. Mol. Gen. Genet., 1997. 253(5): p. 553-61 [PMID:9065688] - Okanami M,Meshi T,Tamai H,Iwabuchi M
HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain. Genes Cells, 1996. 1(1): p. 87-99 [PMID:9078369]
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