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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sobic.004G001100.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 211aa MW: 22639.1 Da PI: 9.8579 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.004G001100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 47.7 | 3.4e-15 | 133 | 182 | 4 | 53 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53
++r+rr++kNRe+A rsR+R++a++ eLe + ++L eN++L+k+ +el+
Sobic.004G001100.1.p 133 SRRQRRMIKNRESAARSRARRQAYTNELELELAQLRRENEMLIKQHQELN 182
79******************************************999997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 211 aa
Download sequence Send
to blast |
MEEVWKDYMS LQPSLISMTP AAGGGGALYS HRHHQHHLSP SGAGASHSPP SFSSPLQPPT 60 PTTTLSLSSN TLEFTYLGGA GAGAGSGGGG GSSTSGDDSR DLMVFSFAPA DQYQYQTMTK 120 QKQSISSAAA GDSRRQRRMI KNRESAARSR ARRQAYTNEL ELELAQLRRE NEMLIKQHQE 180 LNLRLAMSSS AQVPAHYSST SLQRCRSAPP *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK375836 | 4e-35 | AK375836.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3107H21. |