PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G001100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 211aa MW: 22639.1 Da PI: 9.8579 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47.7 | 3.4e-15 | 133 | 182 | 4 | 53 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 ++r+rr++kNRe+A rsR+R++a++ eLe + ++L eN++L+k+ +el+ Sobic.004G001100.1.p 133 SRRQRRMIKNRESAARSRARRQAYTNELELELAQLRRENEMLIKQHQELN 182 79******************************************999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.1E-9 | 130 | 196 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.174 | 132 | 182 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.13E-11 | 134 | 182 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.8E-13 | 134 | 183 | No hit | No description |
Pfam | PF00170 | 7.5E-13 | 134 | 182 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 137 | 152 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MEEVWKDYMS LQPSLISMTP AAGGGGALYS HRHHQHHLSP SGAGASHSPP SFSSPLQPPT 60 PTTTLSLSSN TLEFTYLGGA GAGAGSGGGG GSSTSGDDSR DLMVFSFAPA DQYQYQTMTK 120 QKQSISSAAA GDSRRQRRMI KNRESAARSR ARRQAYTNEL ELELAQLRRE NEMLIKQHQE 180 LNLRLAMSSS AQVPAHYSST SLQRCRSAPP * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G001100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375836 | 4e-35 | AK375836.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3107H21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002453116.2 | 1e-152 | bZIP transcription factor 27 | ||||
TrEMBL | C5XRG8 | 1e-151 | C5XRG8_SORBI; Uncharacterized protein | ||||
STRING | Sb04g000300.1 | 1e-130 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14602 | 10 | 20 | Representative plant | OGRP17801 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G001100.1.p |