 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sobic.003G423200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
| Family |
NAC |
| Protein Properties |
Length: 217aa MW: 24001.7 Da PI: 6.2942 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.003G423200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 53.4 | 8.8e-17 | 27 | 159 | 4 | 128 |
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkd 89
Gf F+Pt++elv ++L+++++g + +++ ++ e+d + + Pw+L +++ +++ +fF+ r + + +r + +g W at
Sobic.003G423200.1.p 27 GFDFDPTEDELVLHFLRPQLRGFPPRVAGAVLEADPCGAAPWELLARYGL-RERGHFFVARGRGRS---AVRRaVSGAGAWMrsATRLG 111
9**************************999**************855544.456699999998654...566646679***85467778 PP
NAM 90 kevlskkgelvglkktLvfy.........kgrapkgektdWvmheyrl 128
++v++ + + + + + fy +g+ ++ +++ Wv++ey++
Sobic.003G423200.1.p 112 QSVTDLGVVVRWSRAKFCFYvpqpgqesgSGQGRQLRSAGWVLEEYQI 159
99999899999*********999888776577777789********86 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 217 aa
Download sequence Send
to blast |
MEQDAANLSA GAGEEEEEAA VRASGGGFDF DPTEDELVLH FLRPQLRGFP PRVAGAVLEA 60
DPCGAAPWEL LARYGLRERG HFFVARGRGR SAVRRAVSGA GAWMRSATRL GQSVTDLGVV 120
VRWSRAKFCF YVPQPGQESG SGQGRQLRSA GWVLEEYQIT DPRCYRRADE EEEDQYWILC 180
RVRRSGDHGR RTESEAGAGM PPTSWNKVME KEVNQK*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012609 | 1e-44 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
