PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G423100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 233aa MW: 25901.9 Da PI: 7.9798 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 55.4 | 2.1e-17 | 27 | 159 | 4 | 128 |
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..d 89 Gf F+Pt++elv ++L+++++g + +++ ++ e+d + + Pw+L +++ +++ +fF+ r + + + +r ++ sg W ++ + Sobic.003G423100.2.p 27 GFDFDPTEDELVLHFLRPQLRGFPPRVAGAVLEADPCGAAPWELLARYGL-RERGHFFVARGRGRGR-TAVRRaVAGSGAWMHSASklG 113 9**************************999**************855544.4566999999998765.555664788****96655235 PP NAM 90 kevlskkgelvglkktLvfy.......kgrapkgektdWvmheyrl 128 ++v++ + + + + + fy +g+ ++ +++ Wv++ey++ Sobic.003G423100.2.p 114 QSVTDLGLVVRWSRVKFCFYvpqpgqeSGQGRQLRSAGWVLEEYQI 159 778887888999********9988877677777789********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-26 | 23 | 185 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.584 | 24 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-11 | 27 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MEEDAANLSA GDGEEEEEAA ERGSGGGFDF DPTEDELVLH FLRPQLRGFP PRVAGAVLEA 60 DPCGAAPWEL LARYGLRERG HFFVARGRGR GRTAVRRAVA GSGAWMHSAS KLGQSVTDLG 120 LVVRWSRVKF CFYVPQPGQE SGQGRQLRSA GWVLEEYQIT DPRCYRRADD EEEDRYWVLC 180 RVRRSGDHGR RTESEAGAGM PPTSWNRSHS RLGVSRIFSS GFITKISRLF VR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G423100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-44 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021313101.1 | 1e-149 | NAC domain-containing protein 48-like | ||||
TrEMBL | A0A1B6Q849 | 1e-166 | A0A1B6Q849_SORBI; Uncharacterized protein | ||||
STRING | Sb03g045610.1 | 1e-129 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13761 | 25 | 28 | Representative plant | OGRP14413 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 2e-09 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G423100.2.p |