PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G416700.1.p

Common Name

Sb03g045030, SORBIDRAFT_03g045030

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

HB-other

Protein Properties

Length: 1150aa MW: 127058 Da PI: 8.9493

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G416700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	16.1	1.9e-05	47	103	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++lF+ + ++ ++e +eL+ +g+t +qV+ +F ++ + +k Sobic.003G416700.1.p 47 KRPRDLLNPKAVKYMQSLFALKDTLGKRETRELSLLCGVTVTQVREFFTIQKSRVRK 103 799*********************************************999988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	0.0071	46	108	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-5	46	109	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	0.001	47	104	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1150 aa Download sequence Send to blast
MVAAQQQLLH EQVDQLQRLV VAQCRLTGVN PLAQEMAAGA LSIKIGKRPR DLLNPKAVKY 60 MQSLFALKDT LGKRETRELS LLCGVTVTQV REFFTIQKSR VRKFVRLSQE KALRIETPKE 120 QDNAYSIDSE QIPLDIEAQA EVIEPLSTLE PVVLQSSLQP TDVPQVSLQS MALQQSDLQH 180 MEVFQNTLHK AEAQQNFAAP MMPPGTMVMQ PTDAKISSDS VQKDIKQEET HPGVESEDKK 240 FLESIFALMQ KEETFSGQVK LMEWILQINN ATVLSRFVTM GGLTIMSTWL SQAAIEEQTS 300 VIHVIFKVLL HLPLHKALPV HMSVVLQTIN RLRFYRTQDI SSRARNLLSR LSKVLVRIQA 360 LKQPQKDSIC KQRISEILRD ESWKSEVDIT EKILALADGA NESRKPEPKK TPMLLTASAD 420 ETNKRSSVQT KSKQKRKVLL VEHPNKKVAG KNANSVRNTS TNNSRPLSAD DIQKAKMRAM 480 FMQEKYGKVD TNKASDKPQA METPKRAGLV NSNASPMPIS PRTSAARPVD PSPSTSKQST 540 DSQPDNREIS GGLKLDIGSK TNVIEKLDSK RVLWQIPPAV WIDPSWSVGA GDNSKEVEVQ 600 TQRNRREKET FYASQKDIPT NPKDPWDLEM DFDDSLTPEI PIDQTPDVDA METDSVRAAP 660 IAVAPVKDKQ IESTSSTSGA VADGAGADTD YELLTVLLKN PELVFALTSN NKGENMPNEQ 720 TIALLDTLKQ TGLSLSELVN SLGNGAGFPK EPEPEAEPLP ASLPSPTPPD RTSMAVWRPE 780 NPMQVMAPNL QQPCLSSRGN TPPIANAMQQ SFSNVVSSLP SQLYASVSVL PAQIQANTPS 840 LPQLAVSVNP PIRHVSPVNN HPNRALVHQH NQQYALLSDP VATPLHQQAA VSKSTHGVQS 900 IPNPAVARSS VPEPNASYTT LPWQSSAADI IHTGRNAATD PWAARTTNSY NTASANTVPF 960 ANQNAYGDQS SHTAYNSYGS AAVSSHSVLP GHGHDRNGYS RPTVSEYQSL MVQDSHRRHS 1020 RSPDPGVVRD YGGTQGYNQQ SRTHWSAGQG QQSYNPEPSR QWSSSQAHQG YTPAESSRQW 1080 STAHQSYTPE PSRQRSSERQ GYNVEPSRSW SSGQQGQNPE ASRQWNRGKQ DPYYNPSDGR 1140 RSYDQHRRR*

Sequence ? help Back to Top

Protein Sequence Length: 1150 aa Download sequence Send to blast

MVAAQQQLLH EQVDQLQRLV VAQCRLTGVN PLAQEMAAGA LSIKIGKRPR DLLNPKAVKY  60
MQSLFALKDT LGKRETRELS LLCGVTVTQV REFFTIQKSR VRKFVRLSQE KALRIETPKE  120
QDNAYSIDSE QIPLDIEAQA EVIEPLSTLE PVVLQSSLQP TDVPQVSLQS MALQQSDLQH  180
MEVFQNTLHK AEAQQNFAAP MMPPGTMVMQ PTDAKISSDS VQKDIKQEET HPGVESEDKK  240
FLESIFALMQ KEETFSGQVK LMEWILQINN ATVLSRFVTM GGLTIMSTWL SQAAIEEQTS  300
VIHVIFKVLL HLPLHKALPV HMSVVLQTIN RLRFYRTQDI SSRARNLLSR LSKVLVRIQA  360
LKQPQKDSIC KQRISEILRD ESWKSEVDIT EKILALADGA NESRKPEPKK TPMLLTASAD  420
ETNKRSSVQT KSKQKRKVLL VEHPNKKVAG KNANSVRNTS TNNSRPLSAD DIQKAKMRAM  480
FMQEKYGKVD TNKASDKPQA METPKRAGLV NSNASPMPIS PRTSAARPVD PSPSTSKQST  540
DSQPDNREIS GGLKLDIGSK TNVIEKLDSK RVLWQIPPAV WIDPSWSVGA GDNSKEVEVQ  600
TQRNRREKET FYASQKDIPT NPKDPWDLEM DFDDSLTPEI PIDQTPDVDA METDSVRAAP  660
IAVAPVKDKQ IESTSSTSGA VADGAGADTD YELLTVLLKN PELVFALTSN NKGENMPNEQ  720
TIALLDTLKQ TGLSLSELVN SLGNGAGFPK EPEPEAEPLP ASLPSPTPPD RTSMAVWRPE  780
NPMQVMAPNL QQPCLSSRGN TPPIANAMQQ SFSNVVSSLP SQLYASVSVL PAQIQANTPS  840
LPQLAVSVNP PIRHVSPVNN HPNRALVHQH NQQYALLSDP VATPLHQQAA VSKSTHGVQS  900
IPNPAVARSS VPEPNASYTT LPWQSSAADI IHTGRNAATD PWAARTTNSY NTASANTVPF  960
ANQNAYGDQS SHTAYNSYGS AAVSSHSVLP GHGHDRNGYS RPTVSEYQSL MVQDSHRRHS  1020
RSPDPGVVRD YGGTQGYNQQ SRTHWSAGQG QQSYNPEPSR QWSSSQAHQG YTPAESSRQW  1080
STAHQSYTPE PSRQRSSERQ GYNVEPSRSW SSGQQGQNPE ASRQWNRGKQ DPYYNPSDGR  1140
RSYDQHRRR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G416700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF166527	0.0	AF166527.1 Zea mays flowering-time protein isoforms alpha and beta (ZmLD) gene, alternatively spliced products, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456900.1	0.0	homeobox protein LUMINIDEPENDENS isoform X1
TrEMBL	A0A1W0W1C9	0.0	A0A1W0W1C9_SORBI; Uncharacterized protein
STRING	Sb03g045030.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34
Representative plant	OGRP4121	13	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-150	HB-other family protein

Link Out ? help Back to Top
Phytozome	Sobic.003G416700.1.p
Entrez Gene	8059417