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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.003G411500.2.p |
Common Name | Sb03g044590, SORBIDRAFT_03g044590 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
Trihelix |
Protein Properties |
Length: 301aa MW: 31729.7 Da PI: 8.9515 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.003G411500.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 71.6 | 1.4e-22 | 30 | 102 | 1 | 71 |
trihelix 1 rWtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71
rWt++e+l+Li+arr me+ + + + p+W++vs+++r++g+er+p qC+++w nl+++ kki ++e+k
Sobic.003G411500.2.p 30 RWTRHETLVLIQARRAMERGGLQlpAVRPRPKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEGKA 102
8*****************99987557799*****************************************985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MSANENSPPV EAAAAAAAAA ASTPRSRLPR WTRHETLVLI QARRAMERGG LQLPAVRPRP 60 KWAAVSAYCR RHGVERGPMQ CRKRWGNLSW DLKKIVAWEG KAVAGAGVGA AGDAQHESFW 120 DMRGDQRRAR QLPSSFDREV YDALVCGASA GGGVAAAVMP PDFGDGDLEG VYPQPPIMVM 180 PISVTESDQK KAGAAAAASD KNSTSSHHGG GGGGGFKDSD ATFVADQAEG TATATPPAAA 240 TAKASIEKQV IEALERGNRA LAQQLEAHRS MWDADREQRA ALLRAMDRVA DAVCRIADKL 300 *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ728031 | 0.0 | KJ728031.1 Zea mays clone pUT6171 trihelix transcription factor (THX11) mRNA, complete cds. |