PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G408400.1.p | ||||||||
Common Name | Sb03g044320, SORBIDRAFT_03g044320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | TCP | ||||||||
Protein Properties | Length: 326aa MW: 34231.7 Da PI: 6.8588 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124.5 | 1.2e-38 | 86 | 165 | 2 | 81 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssss 81 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t++WLlqqa+pai ++tgt++++as+ +++ s Sobic.003G408400.1.p 86 APKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGTIPASALASVAPSLP 165 789******************************************************************77622222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-31 | 91 | 169 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.039 | 92 | 146 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MDPKFPTPPP LNKTEPTTAT TTTTSTAQQQ QQQLDPKDYQ QPAQQHHLQI QIHQPPPQQQ 60 QQQDGGKEQQ LQVVAQPGER RQQALAPKRS SNKDRHTKVD GRGRRIRMPA LCAARIFQLT 120 RELGHKSDGE TVQWLLQQAE PAIVAATGTG TIPASALASV APSLPSPTSG LARPHHHHHP 180 HHMWAPSAAS AGFSSPSFLN SAAAGTGDAA GIGGLMQRMG IPAGLELPGG GAAGGTLGAG 240 GHIGFAPMFA GHAAAMPGLE LGLSQDGHIG VLAAQSISQF YHQVGAAGGS GQMQHPHGHQ 300 HHHHQQQEDG EDDREDGESD DESGQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.4028 | 1e-102 | callus| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G408400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU952600 | 0.0 | EU952600.1 Zea mays clone 1284191 TCP-domain protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002456872.1 | 0.0 | transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 5e-53 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | C5XGD6 | 0.0 | C5XGD6_SORBI; Uncharacterized protein | ||||
STRING | Sb03g044320.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 | Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 1e-39 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G408400.1.p |
Entrez Gene | 8059375 |