PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G407200.1.p
Common NameSb03g044220, SORBIDRAFT_03g044220
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CAMTA
Protein Properties Length: 846aa    MW: 95220.1 Da    PI: 7.3534
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G407200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1170.72.1e-53201325117
                  CG-1   5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                           k+rwlk++e+++iL+n+e ++++++++++p+sgs++L+nr+++ryfr DG++w+kkk+gkt++E+he+LKv++v++l+cyYa++++npt
  Sobic.003G407200.1.p  20 KTRWLKPQEVLKILQNHELFTISHKTPQKPQSGSWFLFNRRVLRYFRSDGFEWQKKKNGKTINEAHERLKVDNVDALNCYYARGDKNPT 108
                           89*************************************************************************************** PP

                  CG-1  94 fqrrcywlLeeelekivlvhylev 117
                           fqrr+yw+L+ ++e+ivlvhy++v
  Sobic.003G407200.1.p 109 FQRRIYWMLDPAYEHIVLVHYRDV 132
                           *********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.40412138IPR005559CG-1 DNA-binding domain
SMARTSM010761.2E-6415133IPR005559CG-1 DNA-binding domain
PfamPF038594.6E-4820132IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.6E-6307392IPR013783Immunoglobulin-like fold
CDDcd001028.40E-5307392No hitNo description
SuperFamilySSF812966.16E-13307390IPR014756Immunoglobulin E-set
PfamPF018334.9E-5308389IPR002909IPT domain
SuperFamilySSF484038.24E-15510606IPR020683Ankyrin repeat-containing domain
SMARTSM00248910512541IPR002110Ankyrin repeat
PROSITE profilePS5029716.892512577IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.3E-15513610IPR020683Ankyrin repeat-containing domain
PfamPF136379.7E-11514566No hitNo description
CDDcd002042.74E-9514562No hitNo description
SMARTSM002485.0E-4545574IPR002110Ankyrin repeat
PROSITE profilePS5008810.9545577IPR002110Ankyrin repeat
SuperFamilySSF525401.89E-7666760IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.012711733IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.016712741IPR000048IQ motif, EF-hand binding site
PfamPF006120.013713732IPR000048IQ motif, EF-hand binding site
SMARTSM000150.041734756IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.267735763IPR000048IQ motif, EF-hand binding site
PfamPF006120.016738756IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MQQQPQQQGL DIDKLQQVVK TRWLKPQEVL KILQNHELFT ISHKTPQKPQ SGSWFLFNRR  60
VLRYFRSDGF EWQKKKNGKT INEAHERLKV DNVDALNCYY ARGDKNPTFQ RRIYWMLDPA  120
YEHIVLVHYR DVLEGSISVS ARNDSSTSNQ NGSASRAEVH SSPGWTSELI VQCPNSCSPG  180
SAEEVSSRTS ASESDWIQHK AALRKLKMQL SLEDKEDCDV NAEEVPANNA PIILPGIQNE  240
ELDTSRNHDD IFDVLDFNED RINGTGTHSC PSAIDVLKNS DTWLEEDQLE AILHPACMTL  300
TENQWFKIHE ISPESAFSSE STKVIIVGDF LCNPPHSSWE LLFGDVKVPV EIIQQGVIRC  360
HTPCLNAGKV RMCLVDGNGK SCSEAREFEF LEKPTKGMID GNRNPCNEAR DSKIHQIPTK  420
SSDELSLLLH YVQMLFDGHA CGLFSNFSLP LPNLGCEFQI NQMDIIKKTY EQLDPENTVN  480
SVMEALLNDK FKQWLSSKCE QNIDGDHFLP KQYHSIIHMI AALGYVLALK PLLSSGVPIN  540
YRDANGWTAL HWAARFGRED MVVALLAAGA AAGALSHPTS EDPAAKTPAS IALAYGFKGL  600
SAFLSEAQLT THLDSIESKE NGKPDSREGG ICRAVDRISD KSSHVHGGTD DQLALKDSLG  660
AVRNAVQAAG RIQAAFRIFS FKKKKEMALQ NRNSCFLSIS ETEAVSLSHG MLEKAALSIQ  720
KNFRCWKKRK EFLRIRNNVV RIQARVRAHQ ERKKYKELLS SVGVLEKVMI RWYRKGVGLR  780
GFNSEAMPID EVDEDVAKVF RKLRVETAID EAVSRVSCIL GSPKAMQQYR RMLKRYQQAK  840
DDHEK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G407200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0697960.0BT069796.1 Zea mays full-length cDNA clone ZM_BFb0283K05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456865.10.0calmodulin-binding transcription activator 4
TrEMBLC5XGC60.0C5XGC6_SORBI; Uncharacterized protein
STRINGSb03g044220.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94073440
Representative plantOGRP1440644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-116Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains