PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G402000.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 322aa    MW: 35240.9 Da    PI: 9.0658
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G402000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-121135327
                          S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                          +++C+++++tGtCk+G++CkF+H++
  Sobic.003G402000.3.p 11 QPECQYYLKTGTCKFGPTCKFHHPR 35
                          799********************96 PP
2zf-CCCH32.12e-105781327
                          S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                          +++C ++++tG+Cky ++CkF+H++
  Sobic.003G402000.3.p 57 EKECAYYLKTGQCKYANTCKFHHPE 81
                          679********************96 PP
3zf-CCCH40.15.9e-13208233227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C+++++tG Ck+G+ CkF+H++
  Sobic.003G402000.3.p 208 DEPECQYYMKTGDCKFGAVCKFHHPR 233
                           789*********************96 PP
4zf-CCCH42.31.2e-13253278126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +++elC+f++r+G+Ck+G++CkF H+
  Sobic.003G402000.3.p 253 PGEELCKFYSRYGICKFGANCKFDHP 278
                           689**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.694836IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6835IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-101135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-61237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-51436IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.615482IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-45481IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-65481IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-75781IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-46080IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695206234IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-5206233IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9208233IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5209233IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4212232IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413252280IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7252279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6253279IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-11254278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5256277IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MKGEYPERVG QPECQYYLKT GTCKFGPTCK FHHPREKAGI AGRVQLNTLG YPLRPNEKEC  60
AYYLKTGQCK YANTCKFHHP ELFNVVPSSR GSPIYTSVHS SASAGPQSYT GTMPSWAFPR  120
ASFIPSPRWQ SPSNYAPMIV PQGLVQVPSW NSYPGQLQSP GAQQTYGSSQ QGESSAGNQG  180
MLSPYRSSSF PVPQYALQRD NVFPERPDEP ECQYYMKTGD CKFGAVCKFH HPRVRSLPPP  240
DCVLSPMGLP IRPGEELCKF YSRYGICKFG ANCKFDHPTM AAPMGVYAYG FSASGSPASA  300
STNVPMARRL LGSPSASGYT S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.13450.0leaf| panicle| pollen| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G402000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369070.0BT036907.1 Zea mays full-length cDNA clone ZM_BFb0146O18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312643.10.0zinc finger CCCH domain-containing protein 12-like
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A1B6Q7U30.0A0A1B6Q7U3_SORBI; Uncharacterized protein
STRINGSb03g043810.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-114zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]