PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G398200.1.p
Common NameSb03g043480, SORBIDRAFT_03g043480
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 702aa    MW: 74250.6 Da    PI: 5.6853
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G398200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.21.7e-19532628295
                           EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           +kvl++sdv+++gr+vlpkk ae h  ++k++ ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ eFv++n+L+egDf+v++  
  Sobic.003G398200.1.p 532 QKVLKQSDVGSLGRIVLPKKEAEVHlpELKTRDGISIPMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGEFVRSNELQEGDFIVIY-- 617
                           79*************************999***********7778*******99777777777777.********************.. PP

                           SS.SEE..EEE CS
                    B3  86 gr.sefelvvk 95 
                           ++ ++++++++
  Sobic.003G398200.1.p 618 SDvKSGKFLIR 628
                           45577765554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-27522637IPR015300DNA-binding pseudobarrel domain
CDDcd100153.75E-32529630No hitNo description
SuperFamilySSF1019362.49E-22530626IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.0E-19531631IPR003340B3 DNA binding domain
PROSITE profilePS5086310.729531633IPR003340B3 DNA binding domain
PfamPF023625.5E-16532627IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MDASGGSSPP HSQENPPEHG GDMGEAPAEE IGGEAADDFM FAEDTFPSLP DFPCLSSPSS  60
STFSSSSSSN SSSAYTNTTA GGAGGGGAAA AGEPSEPASA GEGFDALDDI DQILDFASLS  120
MPWDSEPFPE VSLMLEDAMS APPNPVCDVR REEKPVLEGT GREEACMDAS SVAAGEELPR  180
FFMEWLTSNR ENISAEDLRG IRLRRSTIEA AAARLGGGRQ GNMQLLKLIL TWVQNHHLQK  240
KRPRDVMEEA AGLHGQLPSP GANQGYEFPA GGQDMAAGGG TSWMPYQQQP FTPPAYGGDA  300
VYPNAAGQQY PFHQSSSTSS VVVNSQPFSP PTVGDMHGAG GANMAWPQQY VPFPTPGAST  360
GSYPMPQPFS AGFGGQYAAA GAAGGHPTMA PQRMAGVEAS ATKEARKKRM ARQRRLSCLQ  420
QQRNQQLNLG QIQGSVHPQE PSPRSAHSTP VTPSAGGWGF WSPSSQQQVQ NPLSIKSNSS  480
GEPVPLSLEA VTAPPAKPAP GARLDDSPQR LAAASDKRQG AKADKNLRFL LQKVLKQSDV  540
GSLGRIVLPK KEAEVHLPEL KTRDGISIPM EDIGTSRVWN MRYRFWPNNK SRMYLLENTG  600
EFVRSNELQE GDFIVIYSDV KSGKFLIRGV KVRPPAQEQG NGSSAAGKHK LMSPAGPEKA  660
SVPGDADVDG VSGACKGRSP QGVRRDRQQG AAAMNQMAVS I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-365276311105B3 domain-containing transcription factor FUS3
6j9b_D3e-365276311105B3 domain-containing transcription factor FUS3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Between 10 and 30 days after pollination.
UniprotTISSUE SPECIFICITY: Seed.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G398200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankMZEREGPRO0.0M60214.1 Zea mays viviparous-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458965.10.0regulatory protein viviparous-1 isoform X1
SwissprotP263070.0VIV1_MAIZE; Regulatory protein viviparous-1
TrEMBLC5XFL50.0C5XFL5_SORBI; Uncharacterized protein
STRINGSb03g043480.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75293443
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-66B3 family protein
Publications ? help Back to Top
  1. Williamson JD,Scandalios JG
    Differential response of maize catalases to abscisic acid: Vp1 transcriptional activator is not required for abscisic acid-regulated Cat1 expression.
    Proc. Natl. Acad. Sci. U.S.A., 1992. 89(18): p. 8842-6
    [PMID:1388272]
  2. Hoecker U,Vasil IK,McCarty DR
    Integrated control of seed maturation and germination programs by activator and repressor functions of Viviparous-1 of maize.
    Genes Dev., 1995. 9(20): p. 2459-69
    [PMID:7590227]