PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G391100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 437aa    MW: 46490.9 Da    PI: 9.2744
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G391100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.5e-12368412654
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +++Er RR ri +++ +L++l+P+     +k  + +++L +Av+YIk+L
  Sobic.003G391100.1.p 368 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDLAVDYIKEL 412
                           689*********************7....688***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.799362412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-14365422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.84E-11366417No hitNo description
Gene3DG3DSA:4.10.280.104.7E-15367423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-12368418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9368412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MIHPPWPRRP ELKSSSHRAR TTTARASASL AQSHAPSSQK SSGQARQGEQ STRAAATQHI  60
TIHERSPAYS RQQPAMNLNR LTPAHHGAMR PPSVQGQGLA RYGSAPGSLL AAIAESVTRG  120
DPAPPPPPVS RFYSAESSGL TSCESSCRTD GGGGGRPPPL ERAYGGSGEI RVPPPPQQQH  180
PLAASTLFRH SSSPAGLLSR LMADPHGMAA TGGGMGSYPQ VGSDAAMGHG HRQLSSQWSF  240
SRQDLPQISE MGMIPDIGES IVAGGCNSSS EGGGGGATQA QSSSYLSRNF SVSSWDDTNS  300
IMFSSPSKKP KVDPADDMVT SFSNIDSQFG LSNSSLEMSG MDDYLQMQQD SVACRVRAKR  360
GCATHPRSIA ERERRTRISK RLKKLQDLVP NMDKQTNTSD MLDLAVDYIK ELKDRVEKLK  420
HDQANCCCLG VANKGC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.53260.0callus| leaf| ovary| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G391100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1880380.0AC188038.1 Genomic sequence for Sorghum bicolor BAC clone SB_IBa82G24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456792.20.0transcription factor bHLH128
TrEMBLA0A1B6Q7M40.0A0A1B6Q7M4_SORBI; Uncharacterized protein
STRINGSb03g042860.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.19e-56bHLH family protein