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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sobic.003G382300.1.p |
| Common Name | Sb03g042210, SORBIDRAFT_03g042210 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
| Family |
NAC |
| Protein Properties |
Length: 443aa MW: 47230.4 Da PI: 8.9703 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.003G382300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 158 | 3.9e-49 | 43 | 169 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
+pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+
Sobic.003G382300.1.p 43 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADR 130
79***************************.89***************888889************************************ PP
NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
++++ +++ +glkktLvfy+g+apkg++++W+m+eyrl
Sobic.003G382300.1.p 131 TIKADnSSRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 169
**99856778***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 443 aa
Download sequence Send
to blast |
MSGGGGSRNE NGHGGAAAAA AAAAVVAAGG GGGGDAHEDD LVMPGFRFHP TEEELIEFYL 60
RRKVEGKRFN VELITFLDLY RYDPWELPAM AAIGEKEWFF YVPRDRKYRN GDRPNRVTAS 120
GYWKATGADR TIKADNSSRP IGLKKTLVFY SGKAPKGVRS SWIMNEYRLP QDHTDRYHKT 180
EISLCRVYKR TGIDDGHGHH PATARSTTPS RGATAAQQQD NKQASSSSTP TPPTTPSKMM 240
HLLHGECTSP PTAICRNNNH AAAAHSDNKT AAEPRQQQLP IKPYCNGYHH QLSTASSTTA 300
AAARDQQQAA MGTAAVSSSS SYEQSSRNAN YAFAASTYSL LSLVNAASMG GSGSAAAIDE 360
LSTLVGHVHG QPTYFNHQPG GGGHGHSFLP GLTTPSSQQP PMAALGTLPM SLAAISDKMI 420
WDWNPIVPDA AARDFSTGGG FK*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-52 | 44 | 190 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-52 | 44 | 190 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-52 | 44 | 190 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-52 | 44 | 190 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 4e-52 | 44 | 190 | 19 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 4e-52 | 44 | 190 | 19 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU957131 | 0.0 | EU957131.1 Zea mays clone 1583712 hypothetical protein mRNA, complete cds. |
