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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.003G381400.1.p |
Common Name | Sb03g042110, SORBIDRAFT_03g042110 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
ERF |
Protein Properties |
Length: 304aa MW: 32363.4 Da PI: 8.0671 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.003G381400.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 59.9 | 6e-19 | 103 | 152 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+++GVr ++ +g+++AeIrdp++ rkr +lg+f+taeeAa+a++ a+++l+g
Sobic.003G381400.1.p 103 RFPGVRLRP-WGKFAAEIRDPRQ---RKRLWLGTFDTAEEAAAAYDDAALRLKG 152
689******.**********954...5************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 304 aa
Download sequence Send
to blast |
MSSVDSLTSG RSRREGPPLP RPKRVHVYFV DADATDTDDS SGDEDERAKR RVREVIHIDV 60 EAASAPTRAA QALVLPKKRR LPSQAAASAL VRRRASGAGF RRRFPGVRLR PWGKFAAEIR 120 DPRQRKRLWL GTFDTAEEAA AAYDDAALRL KGSHVVTKFP AEAPSSPWSR TRLRPRREKP 180 LETAEGAAEE RQEAVASAPA PAPAAAPASL DPQAEDGTAL ICPFTSPTSV LRFAADEVPA 240 APALPAFEFL YSGLGELCDL GAATAPSKAA AAAEFDCLPW WEGEDFVTAT GLTASAGAAV 300 SVI*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU975263 | 0.0 | EU975263.1 Zea mays clone 485995 AP2 domain containing protein mRNA, complete cds. |