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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.003G380900.1.p |
Common Name | Sb03g042060, SORBIDRAFT_03g042060 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
ERF |
Protein Properties |
Length: 192aa MW: 19291.5 Da PI: 10.2868 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.003G380900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 52.5 | 1.3e-16 | 21 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
gykGVr+++ +g+Wv+eIr+p + r r +lg++ t+e Aa a++ a l+g
Sobic.003G380900.1.p 21 GYKGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAAVAHDTAVYFLRG 70
8*****777.**********943...5*********************999997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010200 | Biological Process | response to chitin |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 192 aa
Download sequence Send
to blast |
MMRRAEPVGE AADAERRGRG GYKGVRRRRW GKWVSEIRVP GTRERLWLGS YATPEAAAVA 60 HDTAVYFLRG GTGAGAGTGA GVAGGGDVAA LNFPERAAAA YGTGAGAGAA GRLSPRSVQR 120 VASDAGMAAD AQLVAARESA PAPALAHAHR TGIGIGSAHD GGASAHARPG AGREQPAVSG 180 EINVDDMEIL M*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU954530 | 3e-79 | EU954530.1 Zea mays clone 1469452 transcriptional factor TINY mRNA, complete cds. |