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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.003G379000.1.p |
Common Name | Sb03g041860, SORBIDRAFT_03g041860 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
MIKC_MADS |
Protein Properties |
Length: 210aa MW: 24118.6 Da PI: 8.2331 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.003G379000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 94.1 | 6.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++nrqvtfskRrngilKKA E+SvLCdaev v+ifss gkly+y+s
Sobic.003G379000.1.p 9 KRIENSTNRQVTFSKRRNGILKKAREISVLCDAEVGVVIFSSAGKLYDYCS 59
79***********************************************96 PP
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2 | K-box | 70 | 7.4e-24 | 71 | 167 | 1 | 97 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89
yq++sgk l+++k++sl+ e++++kke++++q e+Rhl+GedL+sL+ k+L +e++L+++l++ +k +e++ + + + +++e+e++
Sobic.003G379000.1.p 71 YQTNSGKILWDEKHKSLSAEIDRIKKENDTMQIELRHLKGEDLNSLQPKDLIMIEEALDNGLTNQNEKLMEHWERRVANNKMMEDENKL 159
89999999********************************************************************************* PP
K-box 90 enkaLrkk 97
+L+++
Sobic.003G379000.1.p 160 LAFKLHQQ 167
****9997 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 9.0E-43 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.249 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.72E-35 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.58E-45 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 1.2E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-12 | 82 | 164 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.65 | 84 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010093 | Biological Process | specification of floral organ identity |
GO:0005634 | Cellular Component | nucleus |
GO:0005737 | Cellular Component | cytoplasm |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 210 aa
Download sequence Send
to blast |
MGRGKIEIKR IENSTNRQVT FSKRRNGILK KAREISVLCD AEVGVVIFSS AGKLYDYCSP 60 KTSLSKILEK YQTNSGKILW DEKHKSLSAE IDRIKKENDT MQIELRHLKG EDLNSLQPKD 120 LIMIEEALDN GLTNQNEKLM EHWERRVANN KMMEDENKLL AFKLHQQDIA LSGSMRELEL 180 GYHPDRDLAA QMPITFRVQP SHPNLQDNN*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in lodicules and stamens from early to late stage of flower development. {ECO:0000269|PubMed:10945340, ECO:0000269|Ref.1}. |
Uniprot | TISSUE SPECIFICITY: Highly expressed in anthers and carpels. Expressed in pollen, tapetum and stigma. {ECO:0000269|Ref.1}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AJ292959 | 0.0 | AJ292959.1 Zea mays mRNA for putative MADS-domain transcription factor (m16 gene). |
GenBank | BT064849 | 0.0 | BT064849.1 Zea mays full-length cDNA clone ZM_BFb0210M20 mRNA, complete cds. |