PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G368300.1.p

Common Name

Sb03g040970, SORBIDRAFT_03g040970

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 263aa MW: 27793.4 Da PI: 9.8947

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G368300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.1	1.1e-14	180	229	3	52
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 + +r++r++kNRe+A rsR+RK+a+i+eLe v +Le+eN +L e ee Sobic.003G368300.1.p 180 AMQRQKRMIKNRESAARSRERKQAYIAELESLVTQLEEENAELLREQEER 229 689*************************************9987766543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-8	178	240	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-13	180	237	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.76	180	228	IPR004827	Basic-leucine zipper domain
CDD	cd14707	5.64E-19	182	232	No hit	No description
SuperFamily	SSF57959	5.5E-11	183	230	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.8E-13	183	238	No hit	No description
PROSITE pattern	PS00036	0	185	200	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MASSRVMPSS SPSHTASDLA RLAQAASRPG GGGGGSGLGS MNVEELLRGI YGEMPTPAPP 60 ASEPERPMSP APAPEIATRK TAEQVWKEIT GGGATGEAVA PVAAQAAVPA GAGGATGGPE 120 MTLEDFLARE GAVKDDEVRI SGPSAPVMGF LGGTEGVGVP GGGGGRGRKR QLMDPVDRAA 180 MQRQKRMIKN RESAARSRER KQAYIAELES LVTQLEEENA ELLREQEERH QKRLKELLER 240 VTPVILRKKP SRDLRRTNSM QW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.3318	0.0	callus\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G368300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054149	0.0	BT054149.1 Zea mays full-length cDNA clone ZM_BFb0134E03 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002458823.1	0.0	G-box-binding factor 4
Swissprot	Q0JHF1	9e-97	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	C5XQN2	0.0	C5XQN2_SORBI; Uncharacterized protein
STRING	Sb03g040970.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2665	37	86
Representative plant	OGRP9845	4	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03970.1	2e-19	G-box binding factor 4

Link Out ? help Back to Top
Phytozome	Sobic.003G368300.1.p
Entrez Gene	8062379

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]