PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G363600.8.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 414aa    MW: 45742.8 Da    PI: 7.3873
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G363600.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.32.5e-11103132433
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                            k err+++NReAAr+sR+RKka++++Le+
  Sobic.003G363600.8.p 103 AKTERRLAQNREAARKSRLRKKAYVQQLET 132
                           799*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.2E-8100176IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.243102146IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.1E-8102146No hitNo description
PfamPF001703.5E-8103133IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.06E-7104147No hitNo description
PROSITE patternPS000360107122IPR004827Basic-leucine zipper domain
PfamPF141444.8E-29185259IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MLLLQGWDFQ PAAAAAAYFG FGELEEALIH GGGGAGNAHG VDPGVIIKND VAQAKSAAAA  60
GYLAGAGRPP TLEIFPSWPM RHQQQLHSRK HGSTRKDGKL VDAKTERRLA QNREAARKSR  120
LRKKAYVQQL ETSRIRLQQV EHELQRARSQ GLFVGGCSAA GDMSSGAAMF DMEYARWLDD  180
DSKRLAELRA GLQAQLLDGN LGLIVEECMQ HYDELFQLKA ALARSDVFHL LTGAWATAAE  240
RCFFWMGGFR PSELLKILIP QLDPLTEQQL LGICNLQQSS EQAEEALAQG LHQLHQSLAD  300
TVATGTLNDG AATPNYMNIM AVAIDKLACL ENFYQQADNL RQQTLHQMRR ILTTRQAARC  360
FLSIGEYYSR LRALSNLWAS RPRDNFIGTE SLSPTATELQ ALHHQQQNQF TGF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.87150.0root| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expression in meristem/developing ligule regions. {ECO:0000269|PubMed:9490265}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269|PubMed:9490265}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G363600.8.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0369490.0AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312448.10.0transcription factor LG2 isoform X4
SwissprotO490670.0LG2_MAIZE; Transcription factor LG2
TrEMBLA0A1W0W0J70.0A0A1W0W0J7_SORBI; Uncharacterized protein
STRINGSb03g040530.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-131bZIP family protein
Publications ? help Back to Top
  1. Walsh J,Freeling M
    The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex.
    Plant J., 1999. 19(4): p. 489-95
    [PMID:10504571]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]