PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G363600.6.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 502aa MW: 54572.4 Da PI: 6.7592

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G363600.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35	3.2e-11	191	220	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Sobic.003G363600.6.p 191 AKTERRLAQNREAARKSRLRKKAYVQQLET 220 799*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.2E-8	188	264	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.2E-8	190	234	No hit	No description
PROSITE profile	PS50217	9.243	190	234	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.5E-8	191	221	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.25E-7	192	235	No hit	No description
PROSITE pattern	PS00036	0	195	210	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.5E-29	273	347	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MLLLQGWDFQ PAAAAAAYFG FGELEEALIH GGGGAGNAHG VDPGVIIKND VAQAKSAAAA 60 GYLAGAGRPP TLEIFPSWPM RHQQQLHSGN SQSVGSTTDS SSAQNTMSQM ELVSPASSAP 120 RQEVMMVTTD DYSYKPGLAA APAAAAAPPP SFQQHHPLPL QLHGGDGGGG GGDHDKRKHG 180 STRKDGKLVD AKTERRLAQN REAARKSRLR KKAYVQQLET SRIRLQQVEH ELQRARSQGL 240 FVGGCSAAGD MSSGAAMFDM EYARWLDDDS KRLAELRAGL QAQLLDGNLG LIVEECMQHY 300 DELFQLKAAL ARSDVFHLLT GAWATAAERC FFWMGGFRPS ELLKILIPQL DPLTEQQLLG 360 ICNLQQSSEQ AEEALAQGLH QLHQSLADTV ATGTLNDGAA TPNYMNIMAV AIDKLACLEN 420 FYQQADNLRQ QTLHQMRRIL TTRQAARCFL SIGEYYSRLR ALSNLWASRP RDNFIGTESL 480 SPTATELQAL HHQQQNQFTG F*

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MLLLQGWDFQ PAAAAAAYFG FGELEEALIH GGGGAGNAHG VDPGVIIKND VAQAKSAAAA  60
GYLAGAGRPP TLEIFPSWPM RHQQQLHSGN SQSVGSTTDS SSAQNTMSQM ELVSPASSAP  120
RQEVMMVTTD DYSYKPGLAA APAAAAAPPP SFQQHHPLPL QLHGGDGGGG GGDHDKRKHG  180
STRKDGKLVD AKTERRLAQN REAARKSRLR KKAYVQQLET SRIRLQQVEH ELQRARSQGL  240
FVGGCSAAGD MSSGAAMFDM EYARWLDDDS KRLAELRAGL QAQLLDGNLG LIVEECMQHY  300
DELFQLKAAL ARSDVFHLLT GAWATAAERC FFWMGGFRPS ELLKILIPQL DPLTEQQLLG  360
ICNLQQSSEQ AEEALAQGLH QLHQSLADTV ATGTLNDGAA TPNYMNIMAV AIDKLACLEN  420
FYQQADNLRQ QTLHQMRRIL TTRQAARCFL SIGEYYSRLR ALSNLWASRP RDNFIGTESL  480
SPTATELQAL HHQQQNQFTG F*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.8715	0.0	root\| shoot

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expression in meristem/developing ligule regions. {ECO:0000269\|PubMed:9490265}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G363600.6.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF036949	0.0	AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021312447.1	0.0	transcription factor LG2 isoform X3
Swissprot	O49067	0.0	LG2_MAIZE; Transcription factor LG2
TrEMBL	A0A1W0W0I0	0.0	A0A1W0W0I0_SORBI; Uncharacterized protein
STRING	GRMZM2G060216_P01	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-130	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sobic.003G363600.6.p

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]