PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G363600.5.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 507aa MW: 54925.8 Da PI: 6.8612

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G363600.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.9	3.2e-11	196	225	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Sobic.003G363600.5.p 196 AKTERRLAQNREAARKSRLRKKAYVQQLET 225 799*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.2E-8	193	269	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.243	195	239	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.4E-8	195	239	No hit	No description
Pfam	PF00170	4.5E-8	196	226	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.25E-7	197	240	No hit	No description
PROSITE pattern	PS00036	0	200	215	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.6E-29	278	352	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MGSVCANCLG CRDFQPAAAA AAYFGFGELE EALIHGGGGA GNAHGVDPGV IIKNDVAQAK 60 SAAAAGYLAG AGRPPTLEIF PSWPMRHQQQ LHSGNSQSVG STTDSSSAQN TMSQMELVSP 120 ASSAPRQEVM MVTTDDYSYK PGLAAAPAAA AAPPPSFQQH HPLPLQLHGG DGGGGGGDHD 180 KRKHGSTRKD GKLVDAKTER RLAQNREAAR KSRLRKKAYV QQLETSRIRL QQVEHELQRA 240 RSQGLFVGGC SAAGDMSSGA AMFDMEYARW LDDDSKRLAE LRAGLQAQLL DGNLGLIVEE 300 CMQHYDELFQ LKAALARSDV FHLLTGAWAT AAERCFFWMG GFRPSELLKI LIPQLDPLTE 360 QQLLGICNLQ QSSEQAEEAL AQGLHQLHQS LADTVATGTL NDGAATPNYM NIMAVAIDKL 420 ACLENFYQQA DNLRQQTLHQ MRRILTTRQA ARCFLSIGEY YSRLRALSNL WASRPRDNFI 480 GTESLSPTAT ELQALHHQQQ NQFTGF*

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MGSVCANCLG CRDFQPAAAA AAYFGFGELE EALIHGGGGA GNAHGVDPGV IIKNDVAQAK  60
SAAAAGYLAG AGRPPTLEIF PSWPMRHQQQ LHSGNSQSVG STTDSSSAQN TMSQMELVSP  120
ASSAPRQEVM MVTTDDYSYK PGLAAAPAAA AAPPPSFQQH HPLPLQLHGG DGGGGGGDHD  180
KRKHGSTRKD GKLVDAKTER RLAQNREAAR KSRLRKKAYV QQLETSRIRL QQVEHELQRA  240
RSQGLFVGGC SAAGDMSSGA AMFDMEYARW LDDDSKRLAE LRAGLQAQLL DGNLGLIVEE  300
CMQHYDELFQ LKAALARSDV FHLLTGAWAT AAERCFFWMG GFRPSELLKI LIPQLDPLTE  360
QQLLGICNLQ QSSEQAEEAL AQGLHQLHQS LADTVATGTL NDGAATPNYM NIMAVAIDKL  420
ACLENFYQQA DNLRQQTLHQ MRRILTTRQA ARCFLSIGEY YSRLRALSNL WASRPRDNFI  480
GTESLSPTAT ELQALHHQQQ NQFTGF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.8715	0.0	root\| shoot

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expression in meristem/developing ligule regions. {ECO:0000269\|PubMed:9490265}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G363600.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF036949	0.0	AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021312447.1	0.0	transcription factor LG2 isoform X3
Swissprot	O49067	0.0	LG2_MAIZE; Transcription factor LG2
TrEMBL	A0A1B6Q732	0.0	A0A1B6Q732_SORBI; Uncharacterized protein
STRING	GRMZM2G060216_P01	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-130	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sobic.003G363600.5.p

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]