PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G363600.4.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 518aa MW: 56136 Da PI: 6.3245

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G363600.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.4	5.7e-12	206	236	3	33
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 +k err+++NReAAr+sR+RKka++++Le+ Sobic.003G363600.4.p 206 HDKTERRLAQNREAARKSRLRKKAYVQQLET 236 589**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.8E-8	204	280	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.071	206	250	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.9E-8	206	250	No hit	No description
Pfam	PF00170	6.6E-9	207	237	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.88E-7	208	251	No hit	No description
PROSITE pattern	PS00036	0	211	226	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.8E-29	289	363	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MVHGEESSWR MERAALPLNQ AFAYGAQAHA AAAPPTCFLD FQPAAAAAAY FGFGELEEAL 60 IHGGGGAGNA HGVDPGVIIK NDVAQAKSAA AAGYLAGAGR PPTLEIFPSW PMRHQQQLHS 120 GNSQSVGSTT DSSSAQNTMS QMELVSPASS APRQEVMMVT TDDYSYKPGL AAAPAAAAAP 180 PPSFQQHHPL PLQLHGGDGG GGGGDHDKTE RRLAQNREAA RKSRLRKKAY VQQLETSRIR 240 LQQVEHELQR ARSQGLFVGG CSAAGDMSSG AAMFDMEYAR WLDDDSKRLA ELRAGLQAQL 300 LDGNLGLIVE ECMQHYDELF QLKAALARSD VFHLLTGAWA TAAERCFFWM GGFRPSELLK 360 ILIPQLDPLT EQQLLGICNL QQSSEQAEEA LAQGLHQLHQ SLADTVATGT LNDGAATPNY 420 MNIMAVAIDK LACLENFYQQ ADNLRQQTLH QMRRILTTRQ AARCFLSIGE YYSRLRALSN 480 LWASRPRDNF IGTESLSPTA TELQALHHQQ QNQFTGF*

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MVHGEESSWR MERAALPLNQ AFAYGAQAHA AAAPPTCFLD FQPAAAAAAY FGFGELEEAL  60
IHGGGGAGNA HGVDPGVIIK NDVAQAKSAA AAGYLAGAGR PPTLEIFPSW PMRHQQQLHS  120
GNSQSVGSTT DSSSAQNTMS QMELVSPASS APRQEVMMVT TDDYSYKPGL AAAPAAAAAP  180
PPSFQQHHPL PLQLHGGDGG GGGGDHDKTE RRLAQNREAA RKSRLRKKAY VQQLETSRIR  240
LQQVEHELQR ARSQGLFVGG CSAAGDMSSG AAMFDMEYAR WLDDDSKRLA ELRAGLQAQL  300
LDGNLGLIVE ECMQHYDELF QLKAALARSD VFHLLTGAWA TAAERCFFWM GGFRPSELLK  360
ILIPQLDPLT EQQLLGICNL QQSSEQAEEA LAQGLHQLHQ SLADTVATGT LNDGAATPNY  420
MNIMAVAIDK LACLENFYQQ ADNLRQQTLH QMRRILTTRQ AARCFLSIGE YYSRLRALSN  480
LWASRPRDNF IGTESLSPTA TELQALHHQQ QNQFTGF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.8715	0.0	root\| shoot

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expression in meristem/developing ligule regions. {ECO:0000269\|PubMed:9490265}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G363600.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF036949	0.0	AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021312446.1	0.0	transcription factor LG2 isoform X2
Swissprot	O49067	0.0	LG2_MAIZE; Transcription factor LG2
TrEMBL	A0A1B6Q745	0.0	A0A1B6Q745_SORBI; Uncharacterized protein
STRING	GRMZM2G060216_P01	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-127	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sobic.003G363600.4.p

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]