PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G363600.2.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 430aa MW: 47306.5 Da PI: 6.6257

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G363600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.8	1.6e-10	121	148	6	33
HHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLee 33 err+++NReAAr+sR+RKka++++Le+ Sobic.003G363600.2.p 121 TERRLAQNREAARKSRLRKKAYVQQLET 148 59************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.4E-6	116	192	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.8E-8	122	164	No hit	No description
SuperFamily	SSF57959	7.31E-7	122	163	No hit	No description
Pfam	PF00170	1.7E-7	122	149	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.519	122	162	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	123	138	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.1E-29	201	275	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MVHGEESSWR MERAALPLNQ AFAYGAQAHA AAAPPTCFLD FQPAAAAAAY FGFGELEEAL 60 IHGGGGAGNA HGVDPGVIIK NDVAQAKSAA AAGYLAGAGR PPTLEIFPSW PMRHQQQLHS 120 TERRLAQNRE AARKSRLRKK AYVQQLETSR IRLQQVEHEL QRARSQGLFV GGCSAAGDMS 180 SGAAMFDMEY ARWLDDDSKR LAELRAGLQA QLLDGNLGLI VEECMQHYDE LFQLKAALAR 240 SDVFHLLTGA WATAAERCFF WMGGFRPSEL LKILIPQLDP LTEQQLLGIC NLQQSSEQAE 300 EALAQGLHQL HQSLADTVAT GTLNDGAATP NYMNIMAVAI DKLACLENFY QQADNLRQQT 360 LHQMRRILTT RQAARCFLSI GEYYSRLRAL SNLWASRPRD NFIGTESLSP TATELQALHH 420 QQQNQFTGF*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MVHGEESSWR MERAALPLNQ AFAYGAQAHA AAAPPTCFLD FQPAAAAAAY FGFGELEEAL  60
IHGGGGAGNA HGVDPGVIIK NDVAQAKSAA AAGYLAGAGR PPTLEIFPSW PMRHQQQLHS  120
TERRLAQNRE AARKSRLRKK AYVQQLETSR IRLQQVEHEL QRARSQGLFV GGCSAAGDMS  180
SGAAMFDMEY ARWLDDDSKR LAELRAGLQA QLLDGNLGLI VEECMQHYDE LFQLKAALAR  240
SDVFHLLTGA WATAAERCFF WMGGFRPSEL LKILIPQLDP LTEQQLLGIC NLQQSSEQAE  300
EALAQGLHQL HQSLADTVAT GTLNDGAATP NYMNIMAVAI DKLACLENFY QQADNLRQQT  360
LHQMRRILTT RQAARCFLSI GEYYSRLRAL SNLWASRPRD NFIGTESLSP TATELQALHH  420
QQQNQFTGF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.8715	0.0	root\| shoot

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expression in meristem/developing ligule regions. {ECO:0000269\|PubMed:9490265}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G363600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF036949	0.0	AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021312449.1	0.0	transcription factor LG2 isoform X5
Swissprot	O49067	0.0	LG2_MAIZE; Transcription factor LG2
TrEMBL	A0A1B6Q760	0.0	A0A1B6Q760_SORBI; Uncharacterized protein
STRING	Sb03g040530.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-127	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sobic.003G363600.2.p

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]