PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G363600.10.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 363aa    MW: 38201.4 Da    PI: 10.134
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G363600.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.42.3e-11223253434
                            XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                             k err+++NReAAr+sR+RKka++++Le+ 
  Sobic.003G363600.10.p 223 AKTERRLAQNREAARKSRLRKKAYVQQLETS 253
                            799*************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-6220292IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.243222266IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.8E-8222266No hitNo description
PfamPF001703.8E-8223254IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-8224269No hitNo description
PROSITE patternPS000360227242IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MVHGEESSWR MERAALPLNQ AFAYGAQAHA AAAPPTCFLD FQPAAAAAAY FGFGELEEAL  60
IHGGGGAGNA HGVDPGVIIK NDVAQAKSAA AAGYLAGAGR PPTLEIFPSW PMRHQQQLHS  120
GNSQSVGSTT DSSSAQNTMS QMELVSPASS APRQEVMMVT TDDYSYKPGL AAAPAAAAAP  180
PPSFQQHHPL PLQLHGGDGG GGGGDHDKRK HGSTRKDGKL VDAKTERRLA QNREAARKSR  240
LRKKAYVQQL ETSRIRLQQV EHELQRARSQ APPCSTWSTR GGWTTTASGW RSSELGCRRS  300
CWTATWGSSW RSACSTTTSC SSSRRRSRAP MSSTSSPAPG PPPPSAASSG WAASARLSCS  360
RS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.87150.0root| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expression in meristem/developing ligule regions. {ECO:0000269|PubMed:9490265}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269|PubMed:9490265}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G363600.10.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0369490.0AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458802.20.0transcription factor LG2 isoform X1
RefseqXP_021312445.10.0transcription factor LG2 isoform X1
SwissprotO490671e-148LG2_MAIZE; Transcription factor LG2
TrEMBLA0A1W0W0H80.0A0A1W0W0H8_SORBI; Uncharacterized protein
STRINGGRMZM2G060216_P011e-147(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.22e-20bZIP family protein
Publications ? help Back to Top
  1. Walsh J,Freeling M
    The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex.
    Plant J., 1999. 19(4): p. 489-95
    [PMID:10504571]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]