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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.003G363400.1.p |
Common Name | Sb03g040510, SORBIDRAFT_03g040510 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 412aa MW: 43416 Da PI: 6.3854 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.003G363400.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 44.5 | 3.5e-14 | 327 | 374 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52
+r+rr++kNRe+A rsR+RK+a++ eLe + L++eN++L+ e +++
Sobic.003G363400.1.p 327 RRQRRMIKNRESAARSRARKQAYTVELEAELNHLKEENERLRAEEKTI 374
79****************************************886665 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009409 | Biological Process | response to cold |
GO:0009414 | Biological Process | response to water deprivation |
GO:0009651 | Biological Process | response to salt stress |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0009739 | Biological Process | response to gibberellin |
GO:0010152 | Biological Process | pollen maturation |
GO:0010187 | Biological Process | negative regulation of seed germination |
GO:0010200 | Biological Process | response to chitin |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0048316 | Biological Process | seed development |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 412 aa
Download sequence Send
to blast |
MASDMSKNVR ALDEQEVTSQ QRAGRTSAAA TEEQDPLARQ SSIMSLTLEE LQNSLCEPGR 60 NFGSMNMDEF MANIWNAEEF QAATGTGGCS KEGTEREPMM MPVAAAAAGT GENGAGASGL 120 VRQGSFALPP PLSRKTVEEV WAEINQDPAD SQANANATPQ AVVQPQMGSG GVGGVAGSGR 180 QVTLGEMTLE DFLVKAGVVR GAFAGHGGQA VGMVPAGPMG MQHAAAPMMY QVAAPVPHNA 240 VYPVMGDGMG YHNGYPGGMA VVPPPPPSQC VAAAAVSPGS SDGMSAMTQA EMMNCIGNGG 300 MVRNGGGGGA RKRDSPEDGC TEKTVERRQR RMIKNRESAA RSRARKQAYT VELEAELNHL 360 KEENERLRAE EKTILLSKKK MLVEKMMEQA RENVSAKKGG RGLRRWGSAM W*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves and panicles (PubMed:17604002). Expressed in seeds (PubMed:21055780). {ECO:0000269|PubMed:17604002, ECO:0000269|PubMed:21055780}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that possesses transactivation activity in yeast (PubMed:17604002, PubMed:21055780, PubMed:18236009). Involved in abscisic acid (ABA) signaling pathway. Binds to the G-box motif 5'-CACGTG-3' of TRAB1 gene promoter (PubMed:17604002). Involved in the regulation of pollen maturation. May act as negative regulator of salt stress response (PubMed:18236009). Together with PYL5, PP2C30 and SAPK2, is part of an ABA signaling unit that modulates seed germination and early seedling growth (PubMed:22071266). {ECO:0000269|PubMed:17604002, ECO:0000269|PubMed:18236009, ECO:0000269|PubMed:21055780, ECO:0000269|PubMed:22071266}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by abscisic acid (ABA) (PubMed:21055780, PubMed:18236009, PubMed:22071266). Induced by salt stress. Down-regulated by cold and drought stresses (PubMed:18236009). {ECO:0000269|PubMed:18236009, ECO:0000269|PubMed:21055780, ECO:0000269|PubMed:22071266}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU971027 | 0.0 | EU971027.1 Zea mays clone 356068 ABA response element binding factor mRNA, complete cds. |
Publications
? help Back to Top |
- Zou M,Guan Y,Ren H,Zhang F,Chen F
A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance. Plant Mol. Biol., 2008. 66(6): p. 675-83 [PMID:18236009] - Kim H, et al.
A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth. J. Exp. Bot., 2012. 63(2): p. 1013-24 [PMID:22071266] - Bhatnagar N, et al.
The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10. Plant Mol. Biol., 2017. 93(4-5): p. 389-401 [PMID:28000033]
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