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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.003G353000.3.p |
Common Name | Sb03g039550, SORBIDRAFT_03g039550 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
WRKY |
Protein Properties |
Length: 183aa MW: 19536.8 Da PI: 6.3482 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.003G353000.3.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 33.6 | 8e-11 | 162 | 182 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS
WRKY 2 dDgynWrKYGqKevkgsefpr 22
+Dgy+WrKYGqK++k++++pr
Sobic.003G353000.3.p 162 SDGYKWRKYGQKSIKNNPHPR 182
7*******************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 183 aa
Download sequence Send
to blast |
MGDGDYGLHP EPGAADVAVW PGELDEQLIT ELLSDDSLLL GTLPPPQQVP AGDDPEEQHC 60 SRDTGGASSA PAAPCISGGG TAAEHRELLP QPEAVSRALC SVYTGPTIRD IEKALSTTRP 120 YPWSWSSSRY SPTMHLGRLG ALSRAPEKYT TKVRSCGGKT PSDGYKWRKY GQKSIKNNPH 180 PR*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP003240 | 9e-33 | AP003240.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0406G08. |
GenBank | AP014957 | 9e-33 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
GenBank | CP012609 | 9e-33 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
GenBank | CT835509 | 9e-33 | CT835509.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA014N20, full insert sequence. |