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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.003G353000.1.p |
Common Name | Sb03g039550, SORBIDRAFT_03g039550 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
WRKY |
Protein Properties |
Length: 360aa MW: 37695.8 Da PI: 6.5941 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.003G353000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 99.5 | 2.1e-31 | 162 | 218 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
+Dgy+WrKYGqK++k++++prsYY+Cts++C +kk+ve+s+edp+++ +tYeg H h
Sobic.003G353000.1.p 162 SDGYKWRKYGQKSIKNNPHPRSYYKCTSSRCGAKKHVEKSTEDPEMLMVTYEGPHLH 218
7******************************************************99 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MGDGDYGLHP EPGAADVAVW PGELDEQLIT ELLSDDSLLL GTLPPPQQVP AGDDPEEQHC 60 SRDTGGASSA PAAPCISGGG TAAEHRELLP QPEAVSRALC SVYTGPTIRD IEKALSTTRP 120 YPWSWSSSRY SPTMHLGRLG ALSRAPEKYT TKVRSCGGKT PSDGYKWRKY GQKSIKNNPH 180 PRSYYKCTSS RCGAKKHVEK STEDPEMLMV TYEGPHLHGP QPLFPRRQWL SIDLSGAAAA 240 AAAASKTKQQ QARVSSSSSP AASAALATSD DGGGGWPPSQ QTTTRGRDTE AARGGPTAAA 300 GETATPGPPQ IGRAGDAVST QPRLVLTADS CDDGSAASVP PPWASAAFPH CDSPPMMTW*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FP101616 | 8e-78 | FP101616.1 Phyllostachys edulis cDNA clone: bphyem119j23, full insert sequence. |