PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G346700.1.p
Common NameSb03g039020, SORBIDRAFT_03g039020
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 367aa    MW: 41650.7 Da    PI: 4.9619
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G346700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.3e-0694115426
                           ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             C ff + G+C+ G +CkF+H+
  Sobic.003G346700.1.p  94 IVCEFFKA-GQCQKGFKCKFSHD 115
                           57996666.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.5E-590116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.06590117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-691115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-492116IPR000571Zinc finger, CCCH-type
SMARTSM003564.5160197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.793160198IPR000571Zinc finger, CCCH-type
PfamPF165437.6E-16217296IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MPPKKAAPSK AELAKKQKVV EDKTFGLKNK NKSKNVQKYV QSLHQAVQPK PDASKTAAKK  60
KKEEEKAREK ELNDLFKVAV SQPKVPVGVD PKSIVCEFFK AGQCQKGFKC KFSHDLNVQR  120
KGEKIDIYTD KRDAETMEDW DQETLEKVVE SKKMEYQQNK PTDIVCKYFL DAVEKKQYGW  180
FWVCPNGGKE CHYRHALPPG YVLKSQMKAL LEEESEKIAI EDEIEDQRKK TKTTTPMTTE  240
LFMEWKRKKA EEREAGQAAL KAERAKNDRM SGRELFMADA SVFVDDAEAY EVYEREEEPE  300
ANEESSNKSQ AAGPSSSACN GKEVEEPDDE DIDVDDDLDI DELNELEASL SRTSIQIREP  360
GEGTSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227248RKKTKTTTPMTTELFMEWKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.25410.0embryo| panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G346700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9628980.0EU962898.1 Zea mays clone 246367 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456593.10.0zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLC5XP170.0C5XP17_SORBI; Uncharacterized protein
STRINGSb03g039020.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88592027
Representative plantOGRP464966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-142C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]