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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.003G341100.1.p |
Common Name | Sb03g038510, SORBIDRAFT_03g038510 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
WRKY |
Protein Properties |
Length: 557aa MW: 59355.7 Da PI: 6.7973 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.003G341100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 105.6 | 2.6e-33 | 219 | 275 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh
Sobic.003G341100.1.p 219 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGTHNHA 275
8****************************************.***************7 PP
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2 | WRKY | 105.9 | 2.1e-33 | 379 | 437 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+
Sobic.003G341100.1.p 379 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERASHDLRAVITTYEGKHNHD 437
59********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009409 | Biological Process | response to cold |
GO:0009414 | Biological Process | response to water deprivation |
GO:0009651 | Biological Process | response to salt stress |
GO:0009753 | Biological Process | response to jasmonic acid |
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway |
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
GO:0010120 | Biological Process | camalexin biosynthetic process |
GO:0010200 | Biological Process | response to chitin |
GO:0010508 | Biological Process | positive regulation of autophagy |
GO:0042742 | Biological Process | defense response to bacterium |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0050832 | Biological Process | defense response to fungus |
GO:0070370 | Biological Process | cellular heat acclimation |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 557 aa
Download sequence Send
to blast |
MTTSSSGSIE APAASSRPGS FSFASTSFTD MLGGSADAAA GGASRYKAMT PPSLPLTPSS 60 FFSNIPGGLN PADFLDSPAL LSSSIFPSPT TNAFASQQFS WLTTPGAEQG VKEEQRQSYP 120 DFSFQTAPTT QEAVRTTTTF QPPIPAAPLG EEAYRSQQQQ QQPWGYQQQQ QQPAGMDAGS 180 SQAAYGGAFQ AGSSDAGAMA PHVPASGGYS HQAQRRSSDD GYNWRKYGQK QVKGSENPRS 240 YYKCTFPSCP TKKKVERSLD GQITEIVYKG THNHAKPQNT RRNSGAAAQL LQGGDASEHS 300 FGGTPVATPE NSSASFGDDE VGVGSPRAAN AAGDEFDEDE PDSKRWRKDG DGEGISMAGN 360 RTVREPRVVV QTMSDIDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTTAGC PVRKHVERAS 420 HDLRAVITTY EGKHNHDVPA ARGSAALYRP APPPPPSADN AGHYLAAQPG MAYQTGQQQY 480 GFGGQGSFGL SGGAGAPAQS SGSFAFSSAG FDNPMGSYMS QHQQQQRQND AMHASRAKEE 540 PRDDMSFFPQ SMLYTD*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}. |
Uniprot | TISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT053994 | 0.0 | BT053994.1 Zea mays full-length cDNA clone ZM_BFc0103O21 mRNA, complete cds. |