PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G337800.1.p
Common NameSb03g038200, SORBIDRAFT_03g038200
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 334aa    MW: 36438.5 Da    PI: 4.9844
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G337800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.41.8e-20124184359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                           Dgy+WrKYGqK +++++fpr Y++C+++   +C+++k+v+++ ++dp   +++Y +eH+++
  Sobic.003G337800.1.p 124 DGYQWRKYGQKRITKTQFPRCYFKCSFHrerNCRATKQVQQCsNDDPPQYVVIYFNEHTCD 184
                           9*************************99999********976156899999********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-22110184IPR003657WRKY domain
SuperFamilySSF1182902.62E-20118184IPR003657WRKY domain
SMARTSM007743.3E-31122185IPR003657WRKY domain
PfamPF031064.5E-22124184IPR003657WRKY domain
PROSITE profilePS5081115.985124186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MQTQSRLGGS GSSSSASEDE HEAVIRELTR GHELTAQLRA EALRALRGQG QAEATAAFIL  60
QEVSRAFTVC LSIMSSPARA PPSTSQPPPP TMEIMAPALL APPRRSRDDS MPREQRRTSS  120
PHCDGYQWRK YGQKRITKTQ FPRCYFKCSF HRERNCRATK QVQQCSNDDP PQYVVIYFNE  180
HTCDDTAAWD PTPTVPLDDL SSGLLVARQA GSLLLDERGV QEEHERRLLV SSLACVLGAQ  240
QQQSPAGSGT TAAVNVGHEQ DQEPPPPRAR TRDDAPAPAP APAPAGVDDD APGEMPRSII  300
DVDVAGLDVM DYYVTDALCF RDSYDLPSDG FSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-141241831068OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00619PBMTransfer from AT5G22570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G337800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0638611e-106BT063861.1 Zea mays full-length cDNA clone ZM_BFc0113G18 mRNA, complete cds.
GenBankEU9564871e-106EU956487.1 Zea mays clone 1564344 WRKY DNA binding domain containing protein mRNA, complete cds.
GenBankJX4699481e-106JX469948.1 Zea mays subsp. mays clone UT3209 WRKY-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458684.10.0probable WRKY transcription factor 64
TrEMBLC5XNA20.0C5XNA2_SORBI; Uncharacterized protein
STRINGSb03g038200.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Representative plantOGRP1438644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.14e-17WRKY DNA-binding protein 38