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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.003G337800.1.p |
Common Name | Sb03g038200, SORBIDRAFT_03g038200 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
WRKY |
Protein Properties |
Length: 334aa MW: 36438.5 Da PI: 4.9844 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.003G337800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 64.4 | 1.8e-20 | 124 | 184 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59
Dgy+WrKYGqK +++++fpr Y++C+++ +C+++k+v+++ ++dp +++Y +eH+++
Sobic.003G337800.1.p 124 DGYQWRKYGQKRITKTQFPRCYFKCSFHrerNCRATKQVQQCsNDDPPQYVVIYFNEHTCD 184
9*************************99999********976156899999********96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway |
GO:0042742 | Biological Process | defense response to bacterium |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MQTQSRLGGS GSSSSASEDE HEAVIRELTR GHELTAQLRA EALRALRGQG QAEATAAFIL 60 QEVSRAFTVC LSIMSSPARA PPSTSQPPPP TMEIMAPALL APPRRSRDDS MPREQRRTSS 120 PHCDGYQWRK YGQKRITKTQ FPRCYFKCSF HRERNCRATK QVQQCSNDDP PQYVVIYFNE 180 HTCDDTAAWD PTPTVPLDDL SSGLLVARQA GSLLLDERGV QEEHERRLLV SSLACVLGAQ 240 QQQSPAGSGT TAAVNVGHEQ DQEPPPPRAR TRDDAPAPAP APAPAGVDDD APGEMPRSII 300 DVDVAGLDVM DYYVTDALCF RDSYDLPSDG FSF*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT063861 | 1e-106 | BT063861.1 Zea mays full-length cDNA clone ZM_BFc0113G18 mRNA, complete cds. |
GenBank | EU956487 | 1e-106 | EU956487.1 Zea mays clone 1564344 WRKY DNA binding domain containing protein mRNA, complete cds. |
GenBank | JX469948 | 1e-106 | JX469948.1 Zea mays subsp. mays clone UT3209 WRKY-type transcription factor mRNA, partial cds. |