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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.003G332200.1.p |
Common Name | Sb03g037740, SORBIDRAFT_03g037740 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 334aa MW: 35972.3 Da PI: 7.9558 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.003G332200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 47.4 | 4.3e-15 | 263 | 309 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52
+r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lkk+ +el
Sobic.003G332200.1.p 263 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENEKLKKQ-KEL 309
79****************************************64.444 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MGSQTMASQA GGGGGGVGGS GGAGAAQRGQ MQSLARQGSL YNLTLDEVQS HLGEPLHSMN 60 LEELLKSVFP DGLDPDGGTT SQYEQSSGLY RQGSITMPPE LSKRTVDEVW KGIQDAPKRN 120 VGEGGRRRRE RQPTLGEMTL EDFLVKAGVV TEGYLKDLND VGNVEQVGSA GAAGLTAGAH 180 WLDHYQQRIT AIEPHQHGQH SLPGAYMPGQ LALQPLNVGP GAILESYSDG HITSPMMGAL 240 SDSPTPGTKR GSPGDVADKL MERRQKRMIK NRESAARSRA RKQAYTNELE NKVSRLEEEN 300 EKLKKQKELE KILFSAPLPE PKYQLRRTGS ATF*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 124 | 131 | GRRRRERQ |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}. |
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}. |
Functional Description ? help
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Source |
Description |
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT085758 | 0.0 | BT085758.1 Zea mays full-length cDNA clone ZM_BFc0058B21 mRNA, complete cds. |