PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G329500.2.p
Common NameSb03g037560, SORBIDRAFT_03g037560
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 469aa    MW: 51130.4 Da    PI: 6.8727
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G329500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.61.5e-09183223545
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                           k  rr+++NReAAr+sR+RKka+i++Le    +L++  ++L
  Sobic.003G329500.2.p 183 KTLRRLAQNREAARKSRLRKKAYIQNLESSRLKLTQLEQEL 223
                           7889************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.3E-8179242IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.312181225IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.5E-7183226No hitNo description
CDDcd147081.31E-23183235No hitNo description
PfamPF001701.0E-6183223IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-7184227No hitNo description
PROSITE patternPS000360186201IPR004827Basic-leucine zipper domain
PfamPF141447.2E-33265340IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MESRRGGSTA AAEDAGGGMP SFGPPQHAIH TDVNSMQPSR VTDFGALAQS AGFRIEDLAN  60
LNANALFNLK PNTHTINNSP LQFGSYGKPI SPHINTIEAA TAKTRIDPQL LEQQTGAQSN  120
LVALPTGNIE NWGESAMAGG SPMTDTSSDP DTDERNQMFE QGLVTVPTAS DSSDKSRDKL  180
DQKTLRRLAQ NREAARKSRL RKKAYIQNLE SSRLKLTQLE QELQRARQQG IFISTSGDQP  240
QSTSGNGALA FDMEYARWLE EHNKHVNELR AAVNAHAGDN DLRGIVDSIM AHYDEIFRLK  300
GVAAKADVFH VLSGMWKTPA ERCFMWLGGF RSSELLKLLA GHLEPLTDQQ LVGISNLQQS  360
SQQAEDALSQ GMEALQQSLA ETLASGSLGP AGPSGNVANY MGQMAMAMGK LGTLENFLRQ  420
ADNLRLQTLQ QMQRILTTRQ SARALLAISD YFSRLRALSS LWLARPRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.93150.0embryo| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G329500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0660690.0BT066069.1 Zea mays full-length cDNA clone ZM_BFb0225O03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458658.10.0transcription factor TGAL1
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLC5XMK20.0C5XMK2_SORBI; Uncharacterized protein
STRINGSb03g037560.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-139bZIP family protein