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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G329500.1.p | ||||||||
Common Name | Sb03g037560, SORBIDRAFT_03g037560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 469aa MW: 51130.4 Da PI: 6.8727 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.6 | 1.5e-09 | 183 | 223 | 5 | 45 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka+i++Le +L++ ++L Sobic.003G329500.1.p 183 KTLRRLAQNREAARKSRLRKKAYIQNLESSRLKLTQLEQEL 223 7889************************9777777666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.3E-8 | 179 | 242 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.312 | 181 | 225 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.5E-7 | 183 | 226 | No hit | No description |
CDD | cd14708 | 1.31E-23 | 183 | 235 | No hit | No description |
Pfam | PF00170 | 1.0E-6 | 183 | 223 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.2E-7 | 184 | 227 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 186 | 201 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 7.2E-33 | 265 | 340 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0009627 | Biological Process | systemic acquired resistance | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MESRRGGSTA AAEDAGGGMP SFGPPQHAIH TDVNSMQPSR VTDFGALAQS AGFRIEDLAN 60 LNANALFNLK PNTHTINNSP LQFGSYGKPI SPHINTIEAA TAKTRIDPQL LEQQTGAQSN 120 LVALPTGNIE NWGESAMAGG SPMTDTSSDP DTDERNQMFE QGLVTVPTAS DSSDKSRDKL 180 DQKTLRRLAQ NREAARKSRL RKKAYIQNLE SSRLKLTQLE QELQRARQQG IFISTSGDQP 240 QSTSGNGALA FDMEYARWLE EHNKHVNELR AAVNAHAGDN DLRGIVDSIM AHYDEIFRLK 300 GVAAKADVFH VLSGMWKTPA ERCFMWLGGF RSSELLKLLA GHLEPLTDQQ LVGISNLQQS 360 SQQAEDALSQ GMEALQQSLA ETLASGSLGP AGPSGNVANY MGQMAMAMGK LGTLENFLRQ 420 ADNLRLQTLQ QMQRILTTRQ SARALLAISD YFSRLRALSS LWLARPRE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.9315 | 0.0 | embryo| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00492 | DAP | Transfer from AT5G06950 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G329500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066069 | 0.0 | BT066069.1 Zea mays full-length cDNA clone ZM_BFb0225O03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458658.1 | 0.0 | transcription factor TGAL1 | ||||
Swissprot | Q41558 | 0.0 | HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment) | ||||
TrEMBL | C5XMK2 | 0.0 | C5XMK2_SORBI; Uncharacterized protein | ||||
STRING | Sb03g037560.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP486 | 38 | 185 | Representative plant | OGRP722 | 16 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06950.4 | 1e-139 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G329500.1.p |
Entrez Gene | 8055267 |