PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G319800.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 447aa MW: 47633 Da PI: 6.3903 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.8 | 1.2e-05 | 337 | 374 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Sobic.003G319800.3.p 337 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 374 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.731 | 325 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.01E-5 | 335 | 379 | No hit | No description |
SuperFamily | SSF47459 | 3.27E-11 | 335 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0061 | 336 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.3E-9 | 339 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042631 | Biological Process | cellular response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:2000214 | Biological Process | regulation of proline metabolic process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MLDAHGAEPF IHIYPDSPPP FPPVQFTFLP HHTSSEASTA RRARDRDLPS LPSMADQWWE 60 STSHRSHGAS ACSAAAPPPL TVTGGRVACG WTSPTAAAAE STSSVTFQDP YRSSTHQQPL 120 SDAASSLGDP HMDWTQAFLS GRSDTSFQAV LQEQPPAMND PLIRDGDMSA GSFLVDQQAQ 180 LSPSPSPYGT DPSQAQALFD GTAAVHNISM YGDSESSVTY DATAASMQFS SQLLKTSVPA 240 TASTPMQGVG VGAPMQYLSA GSYLPFGGPL PSHLLLQALQ AANKPNSRSA NANSLTTVKD 300 DCSPPPATRK SVPEPPTTAA KRPRIEAPSP LPTFKVRKEK LGDRITALQQ LVSPFGKTDT 360 ASVLHEAIEY IKFLHDQVAS LSSPYLKNGI PMKQFQHKGS EDSKDNGDTK QDLRSRGLCL 420 VPVASTYTVA AETPEFWHPT FGGTFR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.2156 | 3e-97 | shoot |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G319800.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969801 | 0.0 | EU969801.1 Zea mays clone 335797 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021311257.1 | 0.0 | transcription factor bHLH112-like isoform X2 | ||||
TrEMBL | A0A1W0VZZ9 | 0.0 | A0A1W0VZZ9_SORBI; Uncharacterized protein | ||||
STRING | Sb03g036670.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.3 | 7e-47 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G319800.3.p |