PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G319800.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 448aa    MW: 47819.2 Da    PI: 6.3903
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G319800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.2e-053373741254
                           HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Sobic.003G319800.2.p 337 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 374
                           677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-5335379No hitNo description
SuperFamilySSF474593.27E-11335388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0061336380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-9339382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MLDAHGAEPF IHIYPDSPPP FPPVQFTFLP HHTSSEASTA RRARDRDLPS LPSMADQWWE  60
STSHRSHGAS ACSAAAPPPL TVTGGRVACG WTSPTAAAAE STSSVTFQDP YRSSTHQQPL  120
SDAASSLGDP HMDWTQAFLS GRSDTSFQAV LQEQPPAMND PLIRDGDMSA GSFLVDQQAQ  180
LSPSPSPYGT DPSQAQALFD GTAAVHNISM YGDSESSVTY DATAASMQFS SQLLKTSVPA  240
TASTPMQGVG VGAPMQYLSA GSYLPFGGPL PSHLLLQALQ AANKPNSRSA NANSLTTVKD  300
DCSPPPATRK SVPEPPTTAA KRPRIEAPSP LPTFKVRKEK LGDRITALQQ LVSPFGKTDT  360
ASVLHEAIEY IKFLHDQVAS LSSPYLKNGI PMKQFQHKGS EDSKDNGDTK QDLRSRGLCL  420
VPVASTYTVA AETPEFWHPT FGGTFRW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.21561e-101shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G319800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698010.0EU969801.1 Zea mays clone 335797 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311257.10.0transcription factor bHLH112-like isoform X2
TrEMBLA0A1B6Q6I90.0A0A1B6Q6I9_SORBI; Uncharacterized protein
STRINGSb03g036670.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.19e-47bHLH family protein