PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G313100.1.p

Common Name

Sb03g036100, SORBIDRAFT_03g036100

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 328aa MW: 35223.8 Da PI: 9.7786

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G313100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.1e-09	144	191	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr RR+r+ ++f+ L llP s K K +i+ A YI++L Sobic.003G313100.1.p 144 RHIMRERLRRERLSQGFADLHALLPLG---ASSKGGKNDIVGAAAGYIREL 191 599*********************6...69***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.906	140	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-14	140	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.4E-9	142	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	144	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-5	146	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MDPFYFGPDQ QLDAAAAAVV DEDYYLQASL GLVLSPPAPP PPAALSLPGS AFEAYHQQRR 60 VPALLEHYSL TMSARGRRYS GEQNLHRRMF SYLRRVVAHG HGAAAASTGG ADVVPPAFPA 120 PADETTTTGG VGPSSQAPRS SRFRHIMRER LRRERLSQGF ADLHALLPLG ASSKGGKNDI 180 VGAAAGYIRE LGARKEWLSA RNEVLLQRAA TATRWRGGGG TRPSSVVGGG WGMVVKVRAE 240 SQDHSTAVDA FEKVLQRLKA MEELQVTAIR SRFCAGGMWM NVGVEGQVST REVDVAITNA 300 LMELEGNDPR SSRPSFRCQV EISGQMG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	154	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G313100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456428.1	0.0	transcription factor BHLH148
TrEMBL	C5XLL2	0.0	C5XLL2_SORBI; Uncharacterized protein
STRING	Sb03g036100.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12730	24	32
Representative plant	OGRP15341	3	4

Link Out ? help Back to Top
Phytozome	Sobic.003G313100.1.p
Entrez Gene	8079279