PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G303500.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 411aa MW: 45577.2 Da PI: 6.4174 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.5 | 8.4e-22 | 95 | 147 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t+eq+++Le++F+++++p++++r++L+++lgL+ +qVk+WFqNrR + k Sobic.003G303500.3.p 95 CHKHTPEQIRILEAAFKESPHPDEKQRQQLSEQLGLSASQVKFWFQNRRCQTK 147 5689*********************************************9876 PP | |||||||
2 | START | 107.2 | 2.6e-34 | 224 | 409 | 1 | 163 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla 77 ela +a++el + +++ep+Wv+s + +n+ e+ + f + s+e++r+++vv + +++lv +++d++ qW+e+++ Sobic.003G303500.3.p 224 ELASRALDELTMMCSSGEPLWVRSIetgrDDLNYNEYARLFRHHDDdsgdrrgvWSVEVSRETAVVYGGVTQLVHTFMDVN-QWKEMFP 311 578999***********************9********999665558899***99**************************.******* PP ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEE CS START 78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgili 154 ka+tlevi+ g g+ qlm+ae q l+pl p R+ f+R++++lga +w+ivdvS+d+ ++ ss + + + pSg+++ Sobic.003G303500.3.p 312 smvtKASTLEVIRAGesdhldGIMQLMSAEIQTLTPLIPtRELHFLRHCKKLGAQKWAIVDVSLDNFEPGARtSSTLCMCLKKPSGCIV 400 *********************************************************************9998888999********** PP EEECTCEEE CS START 155 epksnghsk 163 e+ s +++ Sobic.003G303500.3.p 401 EEQSLARCC 409 **9998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.8E-20 | 75 | 147 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 77 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.734 | 89 | 149 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.1E-20 | 90 | 153 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.67E-18 | 91 | 150 | No hit | No description |
Pfam | PF00046 | 2.8E-19 | 93 | 147 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 8.7E-5 | 120 | 129 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 124 | 147 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.7E-5 | 129 | 145 | IPR000047 | Helix-turn-helix motif |
PROSITE profile | PS50848 | 24.75 | 215 | 410 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.48E-18 | 218 | 402 | No hit | No description |
CDD | cd08875 | 1.19E-68 | 219 | 408 | No hit | No description |
SMART | SM00234 | 0.0024 | 224 | 410 | IPR002913 | START domain |
Pfam | PF01852 | 1.3E-25 | 225 | 409 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MGSSGRPPPR TPPNIFPADL TLSLSLAGPF GRKEPVAALG DEVENGSEGH GGIRGGGLRS 60 GEAMEISSEN MGQGSQSGEE ASHEDAGGNK RRKSCHKHTP EQIRILEAAF KESPHPDEKQ 120 RQQLSEQLGL SASQVKFWFQ NRRCQTKVTQ ERHENSLLMH QENTKLKAEH HAIQVERLHM 180 ALENNTATFS TSSSCSMGGI QIRSRNSLDD HVDVGHDDKT MFLELASRAL DELTMMCSSG 240 EPLWVRSIET GRDDLNYNEY ARLFRHHDDD SGDRRGVWSV EVSRETAVVY GGVTQLVHTF 300 MDVNQWKEMF PSMVTKASTL EVIRAGESDH LDGIMQLMSA EIQTLTPLIP TRELHFLRHC 360 KKLGAQKWAI VDVSLDNFEP GARTSSTLCM CLKKPSGCIV EEQSLARCCK * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G303500.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021312124.1 | 0.0 | homeobox-leucine zipper protein ROC9-like | ||||
TrEMBL | A0A1W0VZR4 | 0.0 | A0A1W0VZR4_SORBI; Uncharacterized protein | ||||
STRING | Si004904m | 1e-156 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 6e-89 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G303500.3.p |