PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G303500.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 514aa    MW: 57214.6 Da    PI: 7.5747
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G303500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.11.1e-2195147456
                           -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            +++t+eq+++Le++F+++++p++++r++L+++lgL+ +qVk+WFqNrR + k
  Sobic.003G303500.2.p  95 CHKHTPEQIRILEAAFKESPHPDEKQRQQLSEQLGLSASQVKFWFQNRRCQTK 147
                           5689*********************************************9876 PP
2START150.81.2e-472244541206
                           HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
                 START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla 77 
                           ela +a++el  + +++ep+Wv+s     + +n+ e+ + f   +          s+e++r+++vv + +++lv +++d++ qW+e+++
  Sobic.003G303500.2.p 224 ELASRALDELTMMCSSGEPLWVRSIetgrDDLNYNEYARLFRHHDDdsgdrrgvWSVEVSRETAVVYGGVTQLVHTFMDVN-QWKEMFP 311
                           578999***********************9********999665558899***99**************************.******* PP

                           ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEE CS
                 START  78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgili 154
                               ka+tlevi+ g      g+ qlm+ae q l+pl p R+  f+R++++lga +w+ivdvS+d+ ++    ss +  + + pSg+++
  Sobic.003G303500.2.p 312 smvtKASTLEVIRAGesdhldGIMQLMSAEIQTLTPLIPtRELHFLRHCKKLGAQKWAIVDVSLDNFEPGARtSSTLCMCLKKPSGCIV 400
                           *********************************************************************9998888999********** PP

                           EEECTCE.EEEEEEE-EE--SSXXHHHHHHHH.HHHHHHHHHHHHHHTXXXXXX CS
                 START 155 epksngh.skvtwvehvdlkgrlphwllrslv.ksglaegaktwvatlqrqcek 206
                           e+ s  + +kvtwve+v +++  +++++r++v  sgla+ga++wva+lq qce+
  Sobic.003G303500.2.p 401 EEQSLARcCKVTWVENVKCRKTAVPAMYRQTVtTSGLAFGARRWVAALQLQCER 454
                           *****999****************999999772689****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-2075147IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-2277143IPR009057Homeodomain-like
PROSITE profilePS5007117.73489149IPR001356Homeobox domain
SMARTSM003895.1E-2090153IPR001356Homeobox domain
CDDcd000863.39E-1891150No hitNo description
PfamPF000463.9E-1993147IPR001356Homeobox domain
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
PROSITE profilePS5084835.238215457IPR002913START domain
SuperFamilySSF559611.45E-22218454No hitNo description
CDDcd088751.05E-88219453No hitNo description
SMARTSM002341.7E-33224454IPR002913START domain
PfamPF018523.8E-37225454IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MGSSGRPPPR TPPNIFPADL TLSLSLAGPF GRKEPVAALG DEVENGSEGH GGIRGGGLRS  60
GEAMEISSEN MGQGSQSGEE ASHEDAGGNK RRKSCHKHTP EQIRILEAAF KESPHPDEKQ  120
RQQLSEQLGL SASQVKFWFQ NRRCQTKVTQ ERHENSLLMH QENTKLKAEH HAIQVERLHM  180
ALENNTATFS TSSSCSMGGI QIRSRNSLDD HVDVGHDDKT MFLELASRAL DELTMMCSSG  240
EPLWVRSIET GRDDLNYNEY ARLFRHHDDD SGDRRGVWSV EVSRETAVVY GGVTQLVHTF  300
MDVNQWKEMF PSMVTKASTL EVIRAGESDH LDGIMQLMSA EIQTLTPLIP TRELHFLRHC  360
KKLGAQKWAI VDVSLDNFEP GARTSSTLCM CLKKPSGCIV EEQSLARCCK VTWVENVKCR  420
KTAVPAMYRQ TVTTSGLAFG ARRWVAALQL QCERMVFSVA TNVLTWGLNG HEIFRGGAER  480
QVDPPGQQCQ PLRVDRRVRA YRRRGPAAGD RWA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G303500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312124.10.0homeobox-leucine zipper protein ROC9-like
TrEMBLA0A1W0VZM70.0A0A1W0VZM7_SORBI; Uncharacterized protein
STRINGSi004904m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.11e-109HD-ZIP family protein