PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G300100.1.p

Common Name

Sb03g034950, SORBIDRAFT_03g034950

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 277aa MW: 29258.3 Da PI: 6.1739

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G300100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.2	1.3e-11	152	200	4	52
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr +r NR +A+rsR RK+++i eLe+ v +L++e + L ++ l Sobic.003G300100.1.p 152 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFL 200 5999**********************************88887666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.2E-14	149	213	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.795	151	203	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-9	153	198	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.9E-12	153	207	No hit	No description
SuperFamily	SSF57959	7.03E-12	153	207	No hit	No description
CDD	cd14703	6.81E-24	154	205	No hit	No description
PROSITE pattern	PS00036	0	156	171	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MAQLPPRIPT AVHHWPEGGQ HGAAAAWADD FAEFAASRRG AHRRSLSDSV AFVEVAPADG 60 AAGEFDRLDD DQLMSMFPDE AAAGGGSSSA LGSENGGSSD SDGDKRVGGT SAGGTIAGNG 120 NACDGEQNEA GDAQAPATGQ AAAASTELIR DPKRVKRILA NRQSAQRSRV RKLQYISELE 180 RSVTTLQNEV SVLSPRVAFL DQQRTILTVG NSHLKQRIAA LAQDKIFKDA HQEALKKEIE 240 RLRQVYEQQN LKMSAGAAAS DHGPPPPVRA EKELMS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.3148	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots and panicles. {ECO:0000269\|PubMed:18065552}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G300100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039136	0.0	BT039136.1 Zea mays full-length cDNA clone ZM_BFb0374H13 mRNA, complete cds.
GenBank	BT087285	0.0	BT087285.1 Zea mays full-length cDNA clone ZM_BFb0029G15 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456373.1	0.0	basic leucine zipper 6
Swissprot	Q5JMK6	1e-118	BZP06_ORYSJ; Basic leucine zipper 6
TrEMBL	C5XK77	0.0	C5XK77_SORBI; Uncharacterized protein
STRING	Sb03g034950.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1322	38	125
Representative plant	OGRP126	17	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	2e-56	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sobic.003G300100.1.p
Entrez Gene	8075600

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]