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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.003G300100.1.p |
Common Name | Sb03g034950, SORBIDRAFT_03g034950 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 277aa MW: 29258.3 Da PI: 6.1739 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.003G300100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 36.2 | 1.3e-11 | 152 | 200 | 4 | 52 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52
kr +r NR +A+rsR RK+++i eLe+ v +L++e + L ++ l
Sobic.003G300100.1.p 152 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFL 200
5999**********************************88887666555 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MAQLPPRIPT AVHHWPEGGQ HGAAAAWADD FAEFAASRRG AHRRSLSDSV AFVEVAPADG 60 AAGEFDRLDD DQLMSMFPDE AAAGGGSSSA LGSENGGSSD SDGDKRVGGT SAGGTIAGNG 120 NACDGEQNEA GDAQAPATGQ AAAASTELIR DPKRVKRILA NRQSAQRSRV RKLQYISELE 180 RSVTTLQNEV SVLSPRVAFL DQQRTILTVG NSHLKQRIAA LAQDKIFKDA HQEALKKEIE 240 RLRQVYEQQN LKMSAGAAAS DHGPPPPVRA EKELMS*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots and panicles. {ECO:0000269|PubMed:18065552}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription regulator. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT039136 | 0.0 | BT039136.1 Zea mays full-length cDNA clone ZM_BFb0374H13 mRNA, complete cds. |
GenBank | BT087285 | 0.0 | BT087285.1 Zea mays full-length cDNA clone ZM_BFb0029G15 mRNA, complete cds. |