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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G298100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | VOZ | ||||||||
Protein Properties | Length: 641aa MW: 71175.6 Da PI: 5.2236 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 422.1 | 9.1e-130 | 342 | 558 | 2 | 217 |
VOZ 2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataksp 89 +psafl+pkcalwdc+rpa gse+++dycs++ha+la++e g+pgt+pv+rp+gidlkdg+lfaalsak+qgk+vgip cegaataksp Sobic.003G298100.1.p 342 APSAFLKPKCALWDCPRPAIGSERWHDYCSMYHADLAVQEeGPPGTMPVIRPRGIDLKDGPLFAALSAKIQGKNVGIPICEGAATAKSP 430 69************************************9879*********************************************** PP VOZ 90 wnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineld 178 wna+elfdl ++ege+irewlffdkprraf+sgnrkqrslpdysgrgwhesrkqvmk+fgglkrsyymdpqps+s+ewhlyeyeine+d Sobic.003G298100.1.p 431 WNAPELFDLYIFEGESIREWLFFDKPRRAFDSGNRKQRSLPDYSGRGWHESRKQVMKDFGGLKRSYYMDPQPSNSYEWHLYEYEINECD 519 ***************************************************************************************** PP VOZ 179 alalyrlelklvdekksakgkvskdsladlqkklgrlta 217 a+alyrle+k++d+kk ak+k+++++l+++q++++rl+a Sobic.003G298100.1.p 520 AFALYRLEFKSSDAKKIAKSKLACNPLNEIQQQMVRLSA 558 *************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101447 | 5.75E-5 | 194 | 204 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 641 aa Download sequence Send to blast |
MLGPGVARLL LPRPSLFPRP PTPTQQSGSQ SQKENSAEHL ACETEERTAR ERGERKTTTT 60 PSIPLHFHPS SPPIAAATMG KGPSSRAGSR HHQFRARAMT RVDDLQEVFS GLQSARKDSR 120 PADAAVLEAQ LQQMLREWRS ELSAPSPASS LQGNARELSD PPSDTLRLLQ LAAAEEEDDA 180 TSKMVEQQQQ QQQPPPPPPP PPPPSADQNQ GHAQVRQDMK PEPREEAIDV AVEQPQPQLL 240 SQGVLPNGAA TASAVFHDQM YYVNQELTVE DFLYDDDYKI DLSGSNLDVL NNLEGIVQLE 300 YPQFNFPQEL APNACLDMSN CGQSAGGVFL HMTDLLTTMT SAPSAFLKPK CALWDCPRPA 360 IGSERWHDYC SMYHADLAVQ EEGPPGTMPV IRPRGIDLKD GPLFAALSAK IQGKNVGIPI 420 CEGAATAKSP WNAPELFDLY IFEGESIREW LFFDKPRRAF DSGNRKQRSL PDYSGRGWHE 480 SRKQVMKDFG GLKRSYYMDP QPSNSYEWHL YEYEINECDA FALYRLEFKS SDAKKIAKSK 540 LACNPLNEIQ QQMVRLSADS PVDTKRMARS RTKANPVDVN TNIYSVPNTA VQANVPNAYQ 600 PGPQVDQMTY LNGNVVYGPH LPYGYSTEKS DFYWNSNDGT * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.11096 | 0.0 | leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G298100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042403 | 0.0 | BT042403.1 Zea mays full-length cDNA clone ZM_BFb0220N09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458501.2 | 0.0 | transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-149 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A1B6Q642 | 0.0 | A0A1B6Q642_SORBI; Uncharacterized protein | ||||
STRING | Sb03g034810.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2343 | 38 | 88 | Representative plant | OGRP2327 | 13 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-131 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G298100.1.p |
Publications ? help Back to Top | |||
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