PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G293100.1.p | ||||||||
Common Name | Sb03g034360, SORBIDRAFT_03g034360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GATA | ||||||||
Protein Properties | Length: 413aa MW: 42453.5 Da PI: 5.5954 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.5 | 6.8e-17 | 287 | 321 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t Tp+WR gp g+ktLCnaCG++y++ +l Sobic.003G293100.1.p 287 CLHCETDRTPQWRTGPMGPKTLCNACGVRYKSGRL 321 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.4E-16 | 281 | 331 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 9.9E-15 | 281 | 318 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.716 | 281 | 317 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.14E-15 | 283 | 344 | No hit | No description |
CDD | cd00202 | 1.38E-13 | 286 | 333 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 287 | 312 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 8.8E-15 | 287 | 321 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MEAAASSAEY GYYGGGAAGP RERKTTAAAG CGDHFVVDDL LALPYDDDDE EEGGGEAAPA 60 GDGGEAPPPC LQPAVDARHG VVGLVKEERG GGGLGNFSAD SSTVTALDSC SNSFSGLADG 120 DFPGEFCEPY DQLAELEWLS NYMGEGEESF AAEDLEKLKL ISGGFSPALP PAHVAPAAAA 180 SAAAASAAQP GMFLPEAPVP AKARSKRSRA APGNWSSRLL VLPPTPASPP SPASMAAISP 240 AESGISAQAF PARKPSKKKD AVPAPPSSVS AVAQPGGSAA STEGRRCLHC ETDRTPQWRT 300 GPMGPKTLCN ACGVRYKSGR LVPEYRPAAS PTFVMSKHSN SHRKVLELRR QKEVVQQPHP 360 HVIAGGGGPA GGLMRMQSTM LFDGPSAPPI VAAGDDFLIH HHLGTADYRQ LI* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00530 | DAP | Transfer from AT5G25830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G293100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963121 | 1e-125 | EU963121.1 Zea mays clone 257954 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458475.1 | 0.0 | GATA transcription factor 12 | ||||
TrEMBL | C5XK12 | 0.0 | C5XK12_SORBI; GATA transcription factor | ||||
STRING | Sb03g034360.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3025 | 31 | 78 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 4e-56 | GATA transcription factor 12 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G293100.1.p |
Entrez Gene | 8075562 |