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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.003G287200.1.p |
Common Name | Sb03g033780, SORBIDRAFT_03g033780 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
WRKY |
Protein Properties |
Length: 247aa MW: 26679 Da PI: 7.6103 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.003G287200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 104.3 | 6.8e-33 | 167 | 225 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK vk+se+prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+
Sobic.003G287200.1.p 167 LDDGYRWRKYGQKAVKNSEHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 225
59********************************************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 247 aa
Download sequence Send
to blast |
MENQHLQGDE SSSSHALPSF PYFAVPSPPY APPPPSEDQH STLITALQQQ PSSSACNNDD 60 LPPLGLGPDQ LAAVAAPMIL PPMVDWSALL QQASLMGPQL VPGLLQQVPP LEPLDQSGEN 120 DGGDAGSSSS SKEKVVAKGG GGAGRSGKKK ASRPRFAFQT RSVNDILDDG YRWRKYGQKA 180 VKNSEHPRSY YRCTHHTCNV KKQVQRLAKD TSIVVTTYEG VHNHPCEKLM EALSPILKQL 240 QFLSQF*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ728244 | 1e-145 | KJ728244.1 Zea mays clone pUT6521 WRKY transcription factor (WRKY22) mRNA, partial cds. |